Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1815 ATGGTGAATTCATTGAAGAATTTGCTTCTTTTGTTGTCTTTTTTGGCCATTATTTTTGTCCAAGGCAGGGCCTCTGGGTTAGTCGATACTACATGGTACGATGCACGTGCCACCTTCTATGGCGACATGACGGGTGGCGAAACCATGAAGGGAGCATGCGGGTACGGAAACCTATTCGAGCAAGGGTATGGGCTAGCGACAGCAGCATTAAGCACAACGTTGTTTGAGAACGGTGGAGCGTGCGGAGCATGCTACGAGATAATGTGCATGAACGACAGACAACAACAATGGTGCATACCAAACGCAGGGACAATCAAAGTAACAGCAACAAACTTTTGCCCACCAAACTATACTAAAACAAAGGACATTTGGTGCAACCCACCCCAGCGTCACTTCGACTTGTCCCTCTACATGTTCACCAAAATGGCTCCTTATAGGGCTGGCGTCATCCCAGTCCGCTACCGTAGGACACTCTGCCACAAACTCGGCGGCCTCAGGTTCCAGCTCAACGGGAACCCCTATTGGCTCTTGGTTTTGTTGTACAATGTTGCCGGCGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTACTGGAACTGCCCACTGGCTCCAAATGTCCAGGAATTGGGGCCAGAATTGGGTTGTAGATACGGTCCTTGTCGGCCAGACCTTGTCTTTTCAAGTCACTACTAGCGATCGGAGGACGATTGAGTTTGATGATGTTATGCCGAGCTCTTGGCAGTTCGGCCAGAGTTTTGAAGGCAAGTATAATTTCTAG 780 48.85 MVNSLKNLLLLLSFLAIIFVQGRASGLVDTTWYDARATFYGDMTGGETMKGACGYGNLFEQGYGLATAALSTTLFENGGACGACYEIMCMNDRQQQWCIPNAGTIKVTATNFCPPNYTKTKDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRTLCHKLGGLRFQLNGNPYWLLVLLYNVAGAGDVVDVKIKGSTGTAHWLQMSRNWGQNWVVDTVLVGQTLSFQVTTSDRRTIEFDDVMPSSWQFGQSFEGKYNF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 55227430 55229120 - Tan0000374.1 Tan04g1815 750219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1815 259 Gene3D - 22 160 IPR036908 -
Tan04g1815 259 PANTHER EXPANSIN-A15 9 256 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 Pfam Lytic transglycolase 67 154 IPR009009 -
Tan04g1815 259 Gene3D - 164 259 IPR036749 -
Tan04g1815 259 SMART dpbb_1 67 154 IPR007112 -
Tan04g1815 259 SUPERFAMILY Barwin-like endoglucanases 11 182 IPR036908 -
Tan04g1815 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Tan04g1815 259 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Tan04g1815 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 255 IPR007117 -
Tan04g1815 259 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Tan04g1815 259 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Tan04g1815 259 CDD DPBB_EXPA_N 32 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1815 Tan-Chr4:55227430 Tan05g0412 Tan-Chr5:2890306 2.80E-76 dispersed
Tan04g1815 Tan-Chr4:55227430 Tan04g1788 Tan-Chr4:52479660 9.90E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1815 - - - 0.0