Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1843 ATGGGTTCCTCTTCGTCGTCGTTTTCAGTGATCAAATGGTTCTCTTCTTCCACACACACCTCGCCAATACTTCTCTCCAAGCTCTTTTTGCTTCTCTGCTTCTTCTTCTTCTTTCACACTCAAGTTATTTTTGGCGATTCCGACAAATCGGCGCTTCTTCAGTTCAAAAATGCTGTTTCTGACCCATCGGGGTTGCTTTCCAGCTGGAGTGCGAGTGACTCTGATTACTGCTTGTGGTTTGGCGTTTCCTGCGACTTCAATTCTCGGGTTGTGTCGCTCAACATTTCCGGGAATGGTGGTGCAGGTAATTCGAATGGTTTTTTCTGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATCAGGAGGGGTTGTGTGGGTATTAAAGGCTCACTGACTGGGAAGATTCCACTAGTGATTGGGAAGCTCACTGAGCTTAGGACTTTGTCGCTTCCGTTTAATGGTTTTGAGGGTGAAATTCCTGGTGAAATCTTGGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCGTAATGATTTCGAGAGGCTGGGCAAGTTGCGGATCCTCAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCCGGTTGTGCGAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACATTTCATTGGTCGGTTGAGAGGGGTCTACTTGTCTTTCAATATTTTTACAGGATCCATTCCGAGTGAGCTTGGGAATAACTGTGGGAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGGTCAGTGGGATTCCAAGCAATTTGGGAAATTGCAGTCAGTTGCAGACACTGTTGCTGTATTCCAATATGCTGGAGGAGGCAATTCCTGCTGAAATTGGTAAGTTGCAGAAGCTGGAGGTGCTTGATCTTTCGAGGAATAGCCTCAGTGGTCCAATACCATCTGTGCTGGGAAACTGCTTGGAATTGTCTGTCCTCGTGCTCTCGAATCTTTTCGATCCAATTCCCAAGATCAGTTACACAGATGAAGACTCTCCGACCGGGGAACTCAGTGATGATAGTTTTAACTATTTTGCTGGCGGCATACCTGAGTCAATAACGACCCTTCCAAAACTGAGGATACTGTGGGCCCCTAGTGCAAACCTCAATGGCAGATTCCCTTCCCAATGGGGTAAGTGTGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGTGCTTCCTAGTGGGTTTAGCGTCTGCAAAAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGCGAGCTTGATAAAAACCTTCCAGTTCCTTATATGACTCTGTTTGATCTTAGCGGTAACTACTTTGTTGGTGAGATTCCTATGTTCTGTGGCAATCATTGCTCACCACCGAAGTTCCGTTCAAAGGGATATTTGGATCTTGATGATCCATCGTCTCGGTATCTTGCATTTTTTGTAAATAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGTGATGGCGATCTGATAGTACATAACTTTGGGGAGAATAGCTTTACAGGAAATCTTCTGTCGTTTCCGTTTCCTCGTGAGAAACTGGGAAAGAAAACTGTTTATGCTTATCTTGTGGGTGGTAATAAGCTCACTGGTCCATTCCCTGATAGCATATTTGAGAAATGCGAGGATTTGGGGGGACTGATCTTTAATGTTAGCAACAATGAAATATCTGGCCCATTTTCTGTGACAATTGGTAAAATGTGTGGTTCTCTCAAGTTCTTGGATGCATCTGGTAATCAGATGACTGGGCAGTTACCTCTTAGCTTTGGAGAGCTATTAGCTCTGAATCACCTGAACCTAAGTTGGAACAACTTTCAGTATCAAATACCAACTTCTTTCGGACAGATGGCTGATTTAAGGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATTCCTTCTACGTTAGGAAAGTTGCAGTCTTTGGAGTTGCTGGATCTTTCGTATAACGATCTTTCGGGTGAAATTCCAACAGATCTTGTTAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACCACCCTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCCTGCCATCGAATAACATGATTAAATGTAGTGGTGCAATTGGCAATCCTTACTTACGCCCGTGCCATATGTTTTCTCTGGCTGTGCCATCATCCGAAATGCAGGGTTCAGTTGGTGACCCGAGTAGTCTTGCAGCTTCCCCATCTGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACTTCTGCCTCCGCCATTGTTTCCGTTCTTATTGCTCTGATTATCTTATTTCTATATACCCGAAAGTGGAACTCGAGGTCTAAAGTTCTTGGATCAATGAGAAAGGAAGTGACGGTTTTTACTGATATTGGGGTTTCCCTGACGTTTGAGAATGTGGTTCGTGCCACGAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATAGCATCGGGAGTGCTTGTTGCAATAAAACGCCTTGCTGTAGGTCGATTTCAAGGGGTCCAACAGTTCGATGCAGAAATTAAAACTCTTGGACGGCTGCGCCACCCGAACCTTGTCACGTTAATCGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAATTCATCCAGGAGAGATCTACAAGAGCAGTCGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCACTCGCATATCTTCACGATCAGTGTGTACCACGAGTCCTCCACCGCGATGTGAAACCAAGCAATATACTATTAGACGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACCACAGGTGTGGCTGGAACTTTCGGTTACGTCGCTCCCGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGATGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCAGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTACGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTTGACTCTCTCTCGACAAGGCCGACAATGAAGCAGGTCGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3426 44.83 MGSSSSSFSVIKWFSSSTHTSPILLSKLFLLLCFFFFFHTQVIFGDSDKSALLQFKNAVSDPSGLLSSWSASDSDYCLWFGVSCDFNSRVVSLNISGNGGAGNSNGFFCSDSSKFPLYGLGIRRGCVGIKGSLTGKIPLVIGKLTELRTLSLPFNGFEGEIPGEILGLENLEVLDLEGNSVTGVLRNDFERLGKLRILNLGFNRLTGEIPSSLSGCASLEILNLAGNQLNGTIPHFIGRLRGVYLSFNIFTGSIPSELGNNCGKLEHLDLSGNFLVSGIPSNLGNCSQLQTLLLYSNMLEEAIPAEIGKLQKLEVLDLSRNSLSGPIPSVLGNCLELSVLVLSNLFDPIPKISYTDEDSPTGELSDDSFNYFAGGIPESITTLPKLRILWAPSANLNGRFPSQWGKCESLEMINLAGNYLYGVLPSGFSVCKKLQVLDLSSNRLSGELDKNLPVPYMTLFDLSGNYFVGEIPMFCGNHCSPPKFRSKGYLDLDDPSSRYLAFFVNSIRGATPFEFLGDGDLIVHNFGENSFTGNLLSFPFPREKLGKKTVYAYLVGGNKLTGPFPDSIFEKCEDLGGLIFNVSNNEISGPFSVTIGKMCGSLKFLDASGNQMTGQLPLSFGELLALNHLNLSWNNFQYQIPTSFGQMADLRYLCLAGNNFNGSIPSTLGKLQSLELLDLSYNDLSGEIPTDLVKLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRPCHMFSLAVPSSEMQGSVGDPSSLAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEIASGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57366087 57370294 + Tan0008485.1 Tan04g1843 750247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1843 1141 Gene3D Ribonuclease Inhibitor 45 243 IPR032675 -
Tan04g1843 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 982 994 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1843 1141 Pfam Protein kinase domain 865 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1843 1141 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 366 448 - -
Tan04g1843 1141 SUPERFAMILY L domain-like 240 740 - -
Tan04g1843 1141 Gene3D Phosphorylase Kinase; domain 1 824 937 - -
Tan04g1843 1141 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 346 - -
Tan04g1843 1141 Gene3D Transferase(Phosphotransferase) domain 1 938 1138 - -
Tan04g1843 1141 Pfam Leucine Rich Repeat 433 452 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 650 671 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 673 695 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 626 647 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 698 718 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 601 623 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 519 761 - -
Tan04g1843 1141 CDD STKc_IRAK 868 1136 - -
Tan04g1843 1141 SMART LRR_typ_2 262 286 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 623 647 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 310 334 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 671 695 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 192 216 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 217 240 IPR003591 -
Tan04g1843 1141 SMART LRR_typ_2 168 191 IPR003591 -
Tan04g1843 1141 Gene3D Ribonuclease Inhibitor 553 640 IPR032675 -
Tan04g1843 1141 Gene3D Ribonuclease Inhibitor 641 757 IPR032675 -
Tan04g1843 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 826 937 - -
Tan04g1843 1141 ProSitePatterns Protein kinases ATP-binding region signature. 868 890 IPR017441 GO:0005524(InterPro)
Tan04g1843 1141 Gene3D Ribonuclease Inhibitor 363 538 IPR032675 -
Tan04g1843 1141 Gene3D Ribonuclease Inhibitor 244 354 IPR032675 -
Tan04g1843 1141 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 369 1136 IPR050647 -
Tan04g1843 1141 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Tan04g1843 1141 SUPERFAMILY Protein kinase-like (PK-like) 847 1133 IPR011009 -
Tan04g1843 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 938 1140 - -
Tan04g1843 1141 ProSiteProfiles Protein kinase domain profile. 862 1136 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1843 1141 SMART serkin_6 862 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1843 1141 PRINTS Leucine-rich repeat signature 671 684 - -
Tan04g1843 1141 PRINTS Leucine-rich repeat signature 434 447 - -
Tan04g1843 1141 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515(InterPro)
Tan04g1843 1141 SUPERFAMILY L domain-like 68 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1843 Tan-Chr4:57366087 Tan04g0926 Tan-Chr4:8051596 3.80E-61 dispersed
Tan11g1538 Tan-Chr11:14172463 Tan04g1843 Tan-Chr4:57366087 9.20E-131 transposed
Tan11g0375 Tan-Chr11:3035853 Tan04g1843 Tan-Chr4:57366087 7.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67467 PF00069 Pkinase 1.00E-43 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1843 - - - 0.0