Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1890 ATGGGAAGAGGAAGAGTTCAGCTTAAGAGAATAGAGAACAAAATCAGTCGCCAAGTCACTTTCTCTAAGCGTAGAGCTGGTTTACTCAAGAAAGCCCATGAGATCTCTGTCCTTTGTGAAGCTGATGTTGCTTTAATCGTCTTCTCCACCAAAGGAAAGCTCTTTGAGTACTCCACTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCATTGGCCCCAAATGCAGATTCTGAATTACAGGTAAGTTGGTCTCAGGAGTACCCAAAACTTGCAGCCAGATTGGAAATTGTACAGAAGAACATAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAGAAAGAACCAACTAATGCATGAATCCATTTCAGTGTTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTAAAAGAAAATGAGAAGGTTTTGGTTGAACGTGGACACTGCGATCTCCAAAACTTGGTTCATAATCAGCCCATTTTTGCAATGCCACCATCAATTCCTTCTTTATCTATTGGAGTAAACTTGCATGATGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACATCCAAATACCAGCATGGATGCTTAACCATGTGACTGAAAGTCCTCACAACTAG 753 41.17 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSTDSSMEKILEKYERYSYAERPLAPNADSELQVSWSQEYPKLAARLEIVQKNIRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMHESISVLHKKERELQEENRQLANKVKENEKVLVERGHCDLQNLVHNQPIFAMPPSIPSLSIGVNLHDGRGSRGSDEDETRPTSTNIQIPAWMLNHVTESPHN 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 61746142 61753780 - Tan0011924.1 Tan04g1890 750294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1890 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g1890 250 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 MobiDBLite consensus disorder prediction 213 232 - -
Tan04g1890 250 Pfam K-box region 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g1890 250 Coils Coil 123 146 - -
Tan04g1890 250 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Tan04g1890 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan04g1890 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1890 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan04g1890 250 Coils Coil 152 182 - -
Tan04g1890 250 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2853 Tan-Chr3:81550628 Tan04g1890 Tan-Chr4:61746142 1.70E-26 dispersed
Tan04g1890 Tan-Chr4:61746142 Tan06g1512 Tan-Chr6:20976690 1.20E-41 dispersed
Tan10g2019 Tan-Chr10:64378106 Tan04g1890 Tan-Chr4:61746142 3.80E-28 dispersed
Tan04g1890 Tan-Chr4:61746142 Tan04g1891 Tan-Chr4:61746142 1.70E-102 tandem
Tan04g1890 Tan-Chr4:61746142 Tan05g2334 Tan-Chr5:74774199 1.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27283 PF01486 K-box 1.10E-27 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1890 K09264 - csv:101218674 416.772