Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1893 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATAGAGAACAAGATAAACAGACAAGTGACATTTGCAAAGAGAAGGAATGGACTGTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGCGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTTCAAAGGTACCAAAAATGCAGTTATGGAGCAGTGGAGGTCACGAAACCGGCTAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAAGCTAGATTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGCGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTAGAGTCTTCTTTGAAGCAAGTTAGGTCAACTAAGACACAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATGGAAACCAACAGAGCTCTGACATTAAAGGTACACTGCAGCAGTATCAGATCAAATCACAGCCACCACTGCTCCAAATCATGCCCAACAAGTCAATGGCTTTCTTCCTGGTTGGATGCTTTGAAAACCAAAACTACCTCTCTTTTTTCTACTTTTCTTGCCTTTTTTTTTTTTTAA 657 41.55 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLQRYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLMETNRALTLKVHCSSIRSNHSHHCSKSCPTSQWLSSWLDALKTKTTSLFSTFLAFFFF 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 61851614 61862634 - Tan0010544.2 Tan04g1893 750297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1893 218 FunFam MADS-box transcription factor 1 13 87 - -
Tan04g1893 218 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g1893 218 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g1893 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan04g1893 218 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g1893 218 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan04g1893 218 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2289 Tan-Chr2:91770117 Tan04g1893 Tan-Chr4:61851614 1.20E-57 dispersed
Tan04g1893 Tan-Chr4:61851614 Tan06g1512 Tan-Chr6:20976690 2.00E-67 dispersed
Tan04g1892 Tan-Chr4:61851614 Tan04g1893 Tan-Chr4:61851614 1.80E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27285 PF01486 K-box 7.70E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1893 K09264 - csv:101208204 317.39