Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1898 ATGAGGTTGTTTGTTTCAGCTGTCTTCCTTTTTGTCATATTTTCTCATGGAGCTGCATACGATCCATTGGATCCAAATGGGAACATTACGATCAAATGGGACGTCATGTCTTGGACGCCGGATGGCTATGTGGCGGTTGTGACGTTGAACAACTTCCAAATGTACCGGCATATAATGAATCCTGGATGGACGATGGGGTGGACGTGGGCAAAAAAGGAAGTGATATGGTCGATGGTAGGGTCGCAGACAACCGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTGTTGTAAGAAAACCCCCACTGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGGCAAGATCCTCAAGCTGCTGTTTCAGCCTTCCAGATCAGTGTTGGCCAAGCAGGTAGTTCAAACAAGACTGTCAAACTCCCCAAGAACTTCACTTTGCTCGGTCCTGGCCCCGGATACACTTGTGGCCCTGCAAAGGTCGTGACTTCCACCACCTTCCTCACGCCCGACCGACGTCGCAAAACTCAAGCTCTGATGACTTGGAATGTGACCTGCACTTACTCTCAGTTTCTGGCCAGAAAGAACCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAACGATACGATCACATCTTGTCCGTCTTGCACCTGTGGTTGCCAAAACAAGAACAGCTGCATCAAGAGTGATTCTAAGGTTCTTAAGCTGGTTGGAATCAATACACCGAGGAAAGACAATGCTCCATTGCTGCAGTGCACACATCACATGTGCCCAGTTCGAGTTCACTGGCACATCGCCATCACAAACTTCAACTATCGGATGAACTACTCACTTTGGTCTCTTGTCGTCCAGCACCCAAATCTGAACAATGTAACCCAAGTTTTCAGCTTCGATTACAAACCCCTTGTTCCCTATGAATCAATCAATGATACGGGAATGTTTTACGGGATGAAGTTTTACAACGACCTTCTGATGGAAGCAGGGCCATTTGGGAATGTACAGTCAGAGGTGCTACTGCAAAAGGACCAGAACACCTTCACCTTCAAGCAGGGATGGGCATTTCCTCGAAAAGTTTATTTCAATGGCGACGAGTGCATGCTTCCACCACCCGACACATACCCATTCCTGCCAAATGCTGCCCGCCAAAGCCCCGTTGCCCTCTCATCTTCAATTGCTTTGCTGCTGCTCTTCCTGCTGCTAGCTATTTGCTGA 1266 48.03 MRLFVSAVFLFVIFSHGAAYDPLDPNGNITIKWDVMSWTPDGYVAVVTLNNFQMYRHIMNPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKTPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQISVGQAGSSNKTVKLPKNFTLLGPGPGYTCGPAKVVTSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCTCGCQNKNSCIKSDSKVLKLVGINTPRKDNAPLLQCTHHMCPVRVHWHIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAARQSPVALSSSIALLLLFLLLAIC 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 62525551 62527323 + Tan0009562.1 Tan04g1898 750302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1898 421 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan04g1898 421 PIRSF COBRA 1 421 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan04g1898 421 PANTHER PROTEIN COBRA 5 414 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1898 Tan-Chr4:62525551 Tan09g2023 Tan-Chr9:70835222 1.80E-181 dispersed
Tan04g1898 Tan-Chr4:62525551 Tan04g1899 Tan-Chr4:62527910 4.70E-174 tandem
Tan10g1052 Tan-Chr10:9420233 Tan04g1898 Tan-Chr4:62525551 3.70E-29 transposed
Tan04g1898 Tan-Chr4:62525551 Tan05g2342 Tan-Chr5:74854290 9.70E-156 wgd
Tan04g1898 Tan-Chr4:62525551 Tan09g2022 Tan-Chr9:70831783 1.00E-213 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1898 - - - 0.0