Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1899 ATGATTATGGCTGTTCCCATTTTCAGATTTCTCTTTGCTCTTCTCGCCATTTTTCTTGCCTTCTCCAGCTTTTTTACTTCAACAGGAGCGTATGATCCACTTGATCCAAATGGAAACATTACTGTCAAATGGGATGTTATAAGCTGGACCCCTGATGGCTATGTTGCTGTTGTCACTTTGTACAATTTCCAACAATATCGTCATATCCAAGCACCGGGATGGTCTCTGCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAGCATGTTGGGAGGCCAAGCAACAGAGCAAGGTGATTGTTCTAGATATAAAGGGAACATCCCCCATTGCTGCAAGAGGGATCCAACCGTTGTAGATTTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTTCTCAACTCCTGGGTGCAAGATCCAGTTACTGCAGTGAGCTCATTTCAGCTCAGTGTGGGTGCTGCGGGAACCTCGAATAAAACTGTCAGACTGCCAAAGAACTTCACCTTAAAAGCACCTGGGCCTGGTTATACTTGTGGACCCGCAAAAATTGTTAAACCGAGCAGGTTCATTTCCCCTGACAAACGGAGAGCTACACAGGCCTTGATGACATGGAATATTACATGCACATATTCACAATTTCTGGCCCAAAAAACTCCGACTTGCTGTGTGTCACTATCATCGTTTTACAACGACACAATTGTTTCTTGCCCAAAATGCTCCTGTGGCTGCCAAAGCAATTTGATTGGACCCCAAAGTTGTGTGGAGCCAAATTCTCCGCATTTAGCCTCTGTTGTTACCAGTGCTAGTTCTAGGAAGAACAATTTGGCACCTTTGGTTCAGTGTACAAGCCATATGTGCCCGATCCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTACTGGCGTGTGAAGATCACAATTACAAACTTCAATTACATGATGAACTATACAAATTGGAACTTAGTTGTCCAACATCCCAACTTCGACAATCTAACCCAGATTTTCAGCTTCAACTACAAGTCAATTAATCCATACGGAACGATAAATGATACTGCAATCCTATGGGGAATCAAGTTCTACAATGATTTGCTCATGCAAGCCGGCCCTCTTGGGAATGTGCAGACAGAGCTACTTTTCCGGAAGGATCAATCCACTTTCACATTTGATAAAGGCTGGGCTTTCCCTCGGAGGATCTATTTTAATGGCGATAACTGTGTCATGCCGCCTCCAGAAGCCTATCCATACTTACCAAACATGGGTTCGAAGCAAGGTGTCTCATTGTTTACTACACTATTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCATTCATTTGCGTAA 1362 43.61 MIMAVPIFRFLFALLAIFLAFSSFFTSTGAYDPLDPNGNITVKWDVISWTPDGYVAVVTLYNFQQYRHIQAPGWSLQWKWAKKEVIWSMLGGQATEQGDCSRYKGNIPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPVTAVSSFQLSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSRFISPDKRRATQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLIGPQSCVEPNSPHLASVVTSASSRKNNLAPLVQCTSHMCPIRVHWHVKINYKEYWRVKITITNFNYMMNYTNWNLVVQHPNFDNLTQIFSFNYKSINPYGTINDTAILWGIKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNMGSKQGVSLFTTLLLISLTLLSFHHSFA 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 62527910 62530616 - Tan0012402.1 Tan04g1899 750303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1899 453 PIRSF COBRA 2 453 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan04g1899 453 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan04g1899 453 PANTHER PROTEIN COBRA 17 441 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1899 Tan-Chr4:62527910 Tan09g2023 Tan-Chr9:70835222 1.70E-222 dispersed
Tan04g1898 Tan-Chr4:62525551 Tan04g1899 Tan-Chr4:62527910 4.70E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1899 - - - 0.0