Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1902 ATGCTTTATGACACTGACTTCTTAACCTTCTCTCCATCTTCCTCTATGATTTCCAGTACAATTACGCGGACTGTTTCTCTTTTTCCCAATTCTTTTCTAAACTTCTTTCATATCTCCAAATTCTCTTTTCGTGAAGAATCTGTATGTGCTCTAATGGCAGATTGTATAACCAAACATGTTTCTGCAACTGCAACTGGAACCTTTCTACTCCTGTTCTTCTACCTCCAATTTCTCCCTTTCCCTATTTGGGGTGACTCGCCATCGGCCTACAAACCCATAGACGATATAGTTGTTGATTGTGGTTCCTCTATAAACTCAACTAGGCCTCAGGACACCCGCTCCTGGGTTGGAGACGTTGACTCAAAATTCTTCCCTTCCGATTTCAATCAAAACGACATGTCGGTCATTTCGCAGCCGGAGACGCAATATGGTTCAGTCACTGAGACCCCTTACGTAACAGCACGACTGTCATACTCCGAATTCACCTACGTTTTTCCTGTTAGTCAAGGCCAAAAGTTCATTCGACTTTACTTCTACTCTGCTCCTTACCAAAACTTCGACCGTTACAAAGCCAAATTCTCTGTCAAAACTGGCCTCTACACTCTCCTTCGTGATTTTAATGCTTTCGTCAAGAATGATGATTATGATTCTGACGAGGTTATCCGTGAGTTTTGTGTGTATGCAGAAGGGAATGATAAGAGGCTTAGCGTTACATTCACTCCCACAAATCATGACTCGTATGCTTTTATCAATGGGATTGAAATTGTATCCATGCCCACTAATCTTTATTATACACCACCAGACCCCAACGACCAAGGTGGCCGAGGACTGAAGATCATCGGGAGTAATCAAGTCATCTCAATTGAAAACCACACATCTCTTCAGATGGTATTCAGAACAAATATTGGTGGACAAACCATCTCCCCTGCTGATGACACTGGAATGTTCCGAACTTGGATGGAGGACAGATATTTGTTGAATCCCTATATATATGATGCTCGACCTGCTAATTTATCTATCAATCTCAACTATAGTAGCACAATACCGTCATACACGGCACCGGAAAAAGTGTATCGAACTGCCCGGACGATGGGACCAAACGCTACGCTTAACAAGAGTTACAACCTCACATGGGAGTACCCTGTAGATCCGTTGTTCTATTACATGCTTCGGCTTCATTTTTGTGAGTTTGAGTCTGCAATCAATGAAAGATATGATAGAGTGTTTCTGATTTACATCGAAGATATGGTTGCTGAGAAATATGCGGATGTGATTTATTGGGCTGGCGGGAAAGGGATTCCTTATCGTAAAGATTATGTTGTGTATGTGATTGGCAATGACAAAAAGAAAGTTAATCTCTCTGTTAAACTCCAAGCAAACCCAGACATTTCTGAAACAAAGTTCAACAACGTGATCTTGAATGGAATTGAAATCTTCAAATTGAACGACTCAGATGGTAATCTTGCCGGCCAAAATTCAGATCCAGACGCTACCACCTCCATCCAATCTCATCCACCATCGATCCCGCAATCGAATAATTCAAACAGGAAAATAGTGGCAATTGCAATACCTATCGTGGTCGGAGGTGTGGTCTCCATATTAGCTCTTGGATTGTTTATTTCTCGGCGATGCAGAACATTTAAGGACCAAACGTCCAGCCATGGAACTTCTTGGTGGGCTGCGTATTCCATATCAACAAACAAATCAAGCAAGACTTGCAACTCGAATCTCCCCTCTAATCTTTGTCGTTACTTTTCATTGGCGGAGATTAGAGCCGCGACCAAAGATTTTGATGACATGTTCATTATCGGTGTTGGTGGATTTGGCAATGTGTACAAAGGTTATATCGACGATGAAGCCACCCAAGTGGCAATTAAACGGTTGAAACCGGGCTCAAAACAGGGAGCGCACGAGTTCAAGACAGAGATCGAGATGCTTTCGCAACTTCGGCATCTCCATCTAGTCTCCCTTATCGGGTTTTGTAATGATGGTAACGAAATGATTCTAGTTTATGATTACATGTCTCATGGAACCCTTCGTAACCACTTGTACGGCAGCAATGAAAAACCTCTCACATGGAAAGCACGCCTCCAGATCTGCATAGGAGCAGCAAGAGGGCTACACTACCTCCACACGGGAGCCAAACACACTGTCATCCACCGTGATGTAAAAACCACAAATATTTTACTTGATGATAAATGGGTCGCAAAAGTTTCTGATTTTGGACTGTCAAAAGTTGGGCCGACAAACACGTCCAAAGCCCACATTAGCACAGTAGTCAAAGGCAGCTTTGGTTACCTAGACCCGGAGTACTATCGGCGACAACAGTTGACTGAAAAATCTGACGTTTATTCATTTGGCGTAGTTCTTTGCGAAGTACTATGTGCTCGTCCCCCATTGATGCGCACCGTGGACAAGAAGCAAGGGTATCTTGTGGAGTGGGTCCGGAAATGCCACCGCGACAACACAGTGACTCAAATCATCGACTCAAATATCAAGGAGGAAATCTCGCGGGAATGCTTGAAAAAGTTCTTAGAGATTGCAGTGAGGTGCGTCCAAGATGATGGAATAAAGCGACCGTCAATGAACGACGTCGTGTGGGGATTGGAGTTTGCATTACAACTACAGGAGGCATCGAAGAAGAAAGGAGGTGAAGACGATGAGGATAGTGGCGGCGGTAGTGGTGAGAGAGATGACGAGGAAGAATGGTGGTTGAGGAAGGAGACGTTATTTAGTAGTACCAGTGATCGAGTATCAATGTCAGAGTCGGGGGTGAGCAGTGATGTGACGAAAAGCAATAATGGCCATTCAAGTTATACATATAGTAAAGGGATGTCGGCTACTGTTTTCTCTGAGATTAAGGATCCCTCTGGAAGATGA 2880 43.61 MLYDTDFLTFSPSSSMISSTITRTVSLFPNSFLNFFHISKFSFREESVCALMADCITKHVSATATGTFLLLFFYLQFLPFPIWGDSPSAYKPIDDIVVDCGSSINSTRPQDTRSWVGDVDSKFFPSDFNQNDMSVISQPETQYGSVTETPYVTARLSYSEFTYVFPVSQGQKFIRLYFYSAPYQNFDRYKAKFSVKTGLYTLLRDFNAFVKNDDYDSDEVIREFCVYAEGNDKRLSVTFTPTNHDSYAFINGIEIVSMPTNLYYTPPDPNDQGGRGLKIIGSNQVISIENHTSLQMVFRTNIGGQTISPADDTGMFRTWMEDRYLLNPYIYDARPANLSINLNYSSTIPSYTAPEKVYRTARTMGPNATLNKSYNLTWEYPVDPLFYYMLRLHFCEFESAINERYDRVFLIYIEDMVAEKYADVIYWAGGKGIPYRKDYVVYVIGNDKKKVNLSVKLQANPDISETKFNNVILNGIEIFKLNDSDGNLAGQNSDPDATTSIQSHPPSIPQSNNSNRKIVAIAIPIVVGGVVSILALGLFISRRCRTFKDQTSSHGTSWWAAYSISTNKSSKTCNSNLPSNLCRYFSLAEIRAATKDFDDMFIIGVGGFGNVYKGYIDDEATQVAIKRLKPGSKQGAHEFKTEIEMLSQLRHLHLVSLIGFCNDGNEMILVYDYMSHGTLRNHLYGSNEKPLTWKARLQICIGAARGLHYLHTGAKHTVIHRDVKTTNILLDDKWVAKVSDFGLSKVGPTNTSKAHISTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLCEVLCARPPLMRTVDKKQGYLVEWVRKCHRDNTVTQIIDSNIKEEISRECLKKFLEIAVRCVQDDGIKRPSMNDVVWGLEFALQLQEASKKKGGEDDEDSGGGSGERDDEEEWWLRKETLFSSTSDRVSMSESGVSSDVTKSNNGHSSYTYSKGMSATVFSEIKDPSGR 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63389487 63392815 + Tan0015199.1 Tan04g1902 750306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1902 959 SMART serkin_6 597 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1902 959 FunFam FERONIA receptor-like kinase 292 482 - -
Tan04g1902 959 Gene3D Phosphorylase Kinase; domain 1 558 673 - -
Tan04g1902 959 ProSiteProfiles Protein kinase domain profile. 597 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1902 959 Pfam Protein tyrosine and serine/threonine kinase 603 866 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1902 959 Pfam Malectin-like domain 98 480 IPR024788 -
Tan04g1902 959 FunFam FERONIA receptor-like kinase 95 259 - -
Tan04g1902 959 CDD STKc_IRAK 603 866 - -
Tan04g1902 959 MobiDBLite consensus disorder prediction 490 512 - -
Tan04g1902 959 Gene3D Transferase(Phosphotransferase) domain 1 674 892 - -
Tan04g1902 959 MobiDBLite consensus disorder prediction 879 942 - -
Tan04g1902 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1902 959 ProSitePatterns Protein kinases ATP-binding region signature. 603 626 IPR017441 GO:0005524(InterPro)
Tan04g1902 959 FunFam Receptor-like protein kinase FERONIA 674 890 - -
Tan04g1902 959 PANTHER OS03G0124300 PROTEIN-RELATED 66 545 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Tan04g1902 959 Gene3D - 96 259 - -
Tan04g1902 959 Gene3D - 293 483 - -
Tan04g1902 959 FunFam Receptor-like protein kinase FERONIA 569 673 - -
Tan04g1902 959 SUPERFAMILY Protein kinase-like (PK-like) 571 871 IPR011009 -
Tan04g1902 959 MobiDBLite consensus disorder prediction 908 942 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1902 Tan-Chr4:63389487 Tan04g1906 Tan-Chr4:63742793 0.00E+00 dispersed
Tan04g1902 Tan-Chr4:63389487 Tan04g1904 Tan-Chr4:63582945 0.00E+00 proximal
Tan08g0410 Tan-Chr8:3814332 Tan04g1902 Tan-Chr4:63389487 6.30E-170 transposed
Tan11g0425 Tan-Chr11:3427838 Tan04g1902 Tan-Chr4:63389487 1.30E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67468 PF12819 Malectin_like 4.40E-45 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1902 - - - 0.0