Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1920 ATGCCTGCAGAGAAGCATGATGAGAGACATAAGATGATTAGTACAAATTCAAAAGAAGAGAATTCGCCTCCGAAACTAGCAGCAGCTTCGTCGAGCTCATCGGCGGCGACGCCATGGCTTAAGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGACTGCGCGACCGGCGCGTTAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCTTCAAGCCTCGGCCTTAACTATCAATCCATGCTACTACCTCACACTCAGACACACCCACATAGATCGAACGAGGACGACGAACAAAAGGAAAAGCAACAACACAAAACCAATTCTAATCCCTCTCAGCCTTCTTCTTTCTCAGCCCTTTTAAACAATGTGGCTGCCCCTCCATTTGGGTTTCATCATCATTGGGAGTCACCATCAACAAATCTTCCATTTTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCCACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCATCAAAATTTCTTGATTAACTCAAATTCTCTTGCACTACATCCTTTCAACTCAATAAACCAACCGCCTCATGTTAGGCCTTTTCATTTCAGTATGGCTCCCAAATTCGTTTCTCAAGACAAGATCAACAACAATGGAGATCGACCAAATAAGGATGATGGCTTTGGTTCTGATGAATGA 870 46.21 MPAEKHDERHKMISTNSKEENSPPKLAAASSSSSAATPWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSSSLGLNYQSMLLPHTQTHPHRSNEDDEQKEKQQHKTNSNPSQPSSFSALLNNVAAPPFGFHHHWESPSTNLPFFTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLINSNSLALHPFNSINQPPHVRPFHFSMAPKFVSQDKINNNGDRPNKDDGFGSDE 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64897482 64899509 + Tan0018905.1 Tan04g1920 750324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1920 289 Pfam TCP family transcription factor 56 159 IPR017887 -
Tan04g1920 289 MobiDBLite consensus disorder prediction 1 36 - -
Tan04g1920 289 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 231 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Tan04g1920 289 MobiDBLite consensus disorder prediction 17 36 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 1 16 - -
Tan04g1920 289 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Tan04g1920 289 MobiDBLite consensus disorder prediction 136 169 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 269 289 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 275 289 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 139 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1920 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1920 Tan-Chr4:64897482 Tan05g2643 Tan-Chr5:77916314 7.90E-24 dispersed
Tan04g1920 Tan-Chr4:64897482 Tan04g1921 Tan-Chr4:64897482 3.30E-147 tandem
Tan04g1920 Tan-Chr4:64897482 Tan05g2351 Tan-Chr5:74920232 7.70E-27 wgd
Tan04g1920 Tan-Chr4:64897482 Tan09g2038 Tan-Chr9:70901698 1.40E-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27286 PF03634 TCP 2.60E-29 No_clan Tan TF