Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1920 ATGCCTGCAGAGAAGCATGATGAGAGACATAAGATGATTAGTACAAATTCAAAAGAAGAGAATTCGCCTCCGAAACTAGCAGCAGCTTCGTCGAGCTCATCGGCGGCGACGCCATGGCTTAAGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGACTGCGCGACCGGCGCGTTAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCTTCAAGCCTCGGCCTTAACTATCAATCCATGCTACTACCTCACACTCAGACACACCCACATAGATCGAACGAGGACGACGAACAAAAGGAAAAGCAACAACACAAAACCAATTCTAATCCCTCTCAGCCTTCTTCTTTCTCAGCCCTTTTAAACAATGTGGCTGCCCCTCCATTTGGGTTTCATCATCATTGGGAGTCACCATCAACAAATCTTCCATTTTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCCACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCATCAAAATTTCTTGATTAACTCAAATTCTCTTGCACTACATCCTTTCAACTCAATAAACCAACCGCCTCATGTTAGGCCTTTTCATTTCAGTATGGCTCCCAAATTCGTTTCTCAAGACAAGATCAACAACAATGGAGATCGACCAAATAAGGATGATGGCTTTGGTTCTGATGAATGA 870 46.21 MPAEKHDERHKMISTNSKEENSPPKLAAASSSSSAATPWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSSSLGLNYQSMLLPHTQTHPHRSNEDDEQKEKQQHKTNSNPSQPSSFSALLNNVAAPPFGFHHHWESPSTNLPFFTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLINSNSLALHPFNSINQPPHVRPFHFSMAPKFVSQDKINNNGDRPNKDDGFGSDE 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64897482 64899509 + Tan0018905.1 Tan04g1920 750324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1920 289 Pfam TCP family transcription factor 56 159 IPR017887 -
Tan04g1920 289 MobiDBLite consensus disorder prediction 1 36 - -
Tan04g1920 289 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 231 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Tan04g1920 289 MobiDBLite consensus disorder prediction 17 36 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 1 16 - -
Tan04g1920 289 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Tan04g1920 289 MobiDBLite consensus disorder prediction 136 169 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 269 289 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 275 289 - -
Tan04g1920 289 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1920 Tan-Chr4:64897482 Tan05g2643 Tan-Chr5:77916314 7.90E-24 dispersed
Tan04g1920 Tan-Chr4:64897482 Tan04g1921 Tan-Chr4:64897482 3.30E-147 tandem
Tan04g1920 Tan-Chr4:64897482 Tan05g2351 Tan-Chr5:74920232 7.70E-27 wgd
Tan04g1920 Tan-Chr4:64897482 Tan09g2038 Tan-Chr9:70901698 1.40E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27286 PF03634 TCP 2.60E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1920 - - - 0.0