Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1920 | ATGCCTGCAGAGAAGCATGATGAGAGACATAAGATGATTAGTACAAATTCAAAAGAAGAGAATTCGCCTCCGAAACTAGCAGCAGCTTCGTCGAGCTCATCGGCGGCGACGCCATGGCTTAAGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGACTGCGCGACCGGCGCGTTAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCTTCAAGCCTCGGCCTTAACTATCAATCCATGCTACTACCTCACACTCAGACACACCCACATAGATCGAACGAGGACGACGAACAAAAGGAAAAGCAACAACACAAAACCAATTCTAATCCCTCTCAGCCTTCTTCTTTCTCAGCCCTTTTAAACAATGTGGCTGCCCCTCCATTTGGGTTTCATCATCATTGGGAGTCACCATCAACAAATCTTCCATTTTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCCACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCATCAAAATTTCTTGATTAACTCAAATTCTCTTGCACTACATCCTTTCAACTCAATAAACCAACCGCCTCATGTTAGGCCTTTTCATTTCAGTATGGCTCCCAAATTCGTTTCTCAAGACAAGATCAACAACAATGGAGATCGACCAAATAAGGATGATGGCTTTGGTTCTGATGAATGA | 870 | 46.21 | MPAEKHDERHKMISTNSKEENSPPKLAAASSSSSAATPWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSSSLGLNYQSMLLPHTQTHPHRSNEDDEQKEKQQHKTNSNPSQPSSFSALLNNVAAPPFGFHHHWESPSTNLPFFTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLINSNSLALHPFNSINQPPHVRPFHFSMAPKFVSQDKINNNGDRPNKDDGFGSDE | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 64897482 | 64899509 | + | Tan0018905.1 | Tan04g1920 | 750324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1920 | 289 | Pfam | TCP family transcription factor | 56 | 159 | IPR017887 | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Tan04g1920 | 289 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 14 | 231 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 17 | 36 | - | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Tan04g1920 | 289 | ProSiteProfiles | TCP domain profile. | 56 | 114 | IPR017887 | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 136 | 169 | - | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 269 | 289 | - | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
Tan04g1920 | 289 | MobiDBLite | consensus disorder prediction | 139 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1920 | Tan-Chr4:64897482 | Tan05g2643 | Tan-Chr5:77916314 | 7.90E-24 | dispersed | |
Tan04g1920 | Tan-Chr4:64897482 | Tan04g1921 | Tan-Chr4:64897482 | 3.30E-147 | tandem | |
Tan04g1920 | Tan-Chr4:64897482 | Tan05g2351 | Tan-Chr5:74920232 | 7.70E-27 | wgd | |
Tan04g1920 | Tan-Chr4:64897482 | Tan09g2038 | Tan-Chr9:70901698 | 1.40E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27286 | PF03634 | TCP | 2.60E-29 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1920 | - | - | - | 0.0 |