Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1921 | ATGCAGAAGCATGATGAGAGACATAAGATGATTAGTACAAATTCAAAAGAAGAGAATTCGCCTCCGAAACTAGCAGCAGCTTCGTCGAGCTCATCGGCGGCGACGCCATGGCTTAAGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGACTGCGCGACCGGCGCGTTAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCTTCAAGCCTCGGCCTTAACTATCAATCCATGCTACTACCTCACACTCAGACACACCCACATAGATCGAACGAGGACGACGAACAAAAGGAAAAGCAACAACACAAAACCAATTCTAATCCCTCTCAGCCTTCTTCTTTCTCAGCCCTTTTAAACAATGTGGCTGCCCCTCCATTTGGGTTTCATCATCATTGGGAGTCACCATCAACAAATCTTCCATTTTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCCACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCATCAAAATTTCTTGATTAACTCAAATTCTCTTGCACTACATCCTTTCAACTCAATAAACCAACCGCCTCATGTTAGGCCTTTTCATTTCAGTATGGCTCCCAAATTCGTTTCTCAAGACAAGATCAACAACAATGGAGATCGACCAAATAAGGATGATGGCTTTGGTTCTGATGAATGA | 864 | 46.06 | MQKHDERHKMISTNSKEENSPPKLAAASSSSSAATPWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSSSLGLNYQSMLLPHTQTHPHRSNEDDEQKEKQQHKTNSNPSQPSSFSALLNNVAAPPFGFHHHWESPSTNLPFFTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLINSNSLALHPFNSINQPPHVRPFHFSMAPKFVSQDKINNNGDRPNKDDGFGSDE | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 64897482 | 64899509 | + | Tan0018905.2 | Tan04g1921 | 750325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 15 | 34 | - | - | |
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 134 | 167 | - | - | |
Tan04g1921 | 287 | Pfam | TCP family transcription factor | 54 | 157 | IPR017887 | - | |
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 267 | 287 | - | - | |
Tan04g1921 | 287 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 12 | 229 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) | |
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 273 | 287 | - | - | |
Tan04g1921 | 287 | MobiDBLite | consensus disorder prediction | 137 | 153 | - | - | |
Tan04g1921 | 287 | ProSiteProfiles | TCP domain profile. | 54 | 112 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1921 | Tan-Chr4:64897482 | Tan09g2038 | Tan-Chr9:70901698 | 1.30E-31 | dispersed | |
Tan04g1920 | Tan-Chr4:64897482 | Tan04g1921 | Tan-Chr4:64897482 | 3.30E-147 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27287 | PF03634 | TCP | 2.50E-29 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1921 | - | - | - | 0.0 |