Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1948 ATGGATTCGGGAATTTTCTCGCCGTTTTTCCTTCTGTGGTTAGTGGTGCTATGGAGTTGCTATTTCGAAACCTACCAATATTCCAGATCTATTATTTCTATAACTAATTTCACACCAACTCAAAATTTAATCTATAATAGAGTCGTCAATCCCGACGATCACTCTCCGGCTCCGGCGACCTCTCAAGTTACTGTTCGATCTTTTCTCAACGGCCTAGCTCCGACTCCGGCGGTGACCGCACCGGCTTCTGTTAAGTATTCTCCGTGGACTTCCCCAATTGCGTATCCTCCGGCCAGCCAACCTCCATCGACTACCCCAAGTGCGTATCCTTGGGACAGTCAACCATCAGGAAATCAAATTCCAACATCTGATCAGATATTGATGATTATCATTGGTTTGATTGTAGTCCTACTCTACGTTATGATCATATACATCGGAAGAAGACGTATGCTATCAAGAAAAACATTACCAACATTCAAGGAGAGAATGATAAATATGGAATCCATAATGAATTCTGGGCCAAAGCGATATCATTATTCGGAGATCAAGAAAATGACCAACTCATTTTCAAACAAAGTAGGAGAAGGAGGATATGGCATTGTCTACCGAGGTAAACTAGATAATGGTACCCTCGTAGCTATAAAAGTACTAAAGGTGTCAAAAAGTGATGGTGAAGATTTCATAAATGAAGTTATGAGTATTAGCAAAACATCACATGTTAATATAGTTAGTCTTTTAGGATTTTCTTACAACTCAAAGGAAATAGCGCTTGTATATGAATTCATGTCCAATGGTTCACTCGATAGCTTCATCTCTAGAAGTCACAACCTTGAGATGAAAACCGTTCATAGAATCGTTAAAGGCGTGGCAAAAGGATTAGAGTATCTACATTGCGGTTGTAGTACAAGGATAGTCCATTTCGACATAAAGCCTCAAAACATCCTTTTGGATGAAGATTTCAACCCTAAAATTTCTGACTTTGGTCTTGCAAAGCTTTGCAAACGAAAGGATAGTGTGATTTCAATGATGGGTGCAAGGGGGACAGTCGGGTTCATAGCACCAGAAGTTTTTAGTCGTGCATTTGGAATTGTCTCGTACAAATCTGATGTGTATAGCTATGGAATGTTGGTTCTTGATCTTGTATTGGGTGGAACAAGAAACCCTAGTTCAAAATTTGTATCTGATGTGAGTGAAATGTACTTTCCAAATTGGGTTTTTAAAACATTTGAAGGAGGTAAGGCTTTAAGAACAAATCAGAGTTTGATAGAGGAAGATGAAGAAATGGAGAAGAAGATGGTTATGGTAGGTTTGTGGTGCATTCAAACATCTCCGCTCGATAGGCCTTCAATGACTAAAGTATTGGAGATGTTGGATGGAAGCATTCATTCATTGCAAATGCCTCCAAGATCTTCCTTGGTTCCCCCTCGGCAATCTACCTTTGAATCATCATCCTCAGATGAGATTGTTTAA 1470 39.66 MDSGIFSPFFLLWLVVLWSCYFETYQYSRSIISITNFTPTQNLIYNRVVNPDDHSPAPATSQVTVRSFLNGLAPTPAVTAPASVKYSPWTSPIAYPPASQPPSTTPSAYPWDSQPSGNQIPTSDQILMIIIGLIVVLLYVMIIYIGRRRMLSRKTLPTFKERMINMESIMNSGPKRYHYSEIKKMTNSFSNKVGEGGYGIVYRGKLDNGTLVAIKVLKVSKSDGEDFINEVMSISKTSHVNIVSLLGFSYNSKEIALVYEFMSNGSLDSFISRSHNLEMKTVHRIVKGVAKGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKDSVISMMGARGTVGFIAPEVFSRAFGIVSYKSDVYSYGMLVLDLVLGGTRNPSSKFVSDVSEMYFPNWVFKTFEGGKALRTNQSLIEEDEEMEKKMVMVGLWCIQTSPLDRPSMTKVLEMLDGSIHSLQMPPRSSLVPPRQSTFESSSSDEIV 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68032580 68045616 + Tan0006338.1 Tan04g1948 750352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1948 489 FunFam PR5-like receptor kinase 262 469 - -
Tan04g1948 489 MobiDBLite consensus disorder prediction 466 489 - -
Tan04g1948 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1948 489 SMART serkin_6 187 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1948 489 ProSiteProfiles Protein kinase domain profile. 187 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1948 489 PANTHER RUST RESISTANCE KINASE LR10-RELATED 158 478 IPR045874 GO:0004672(InterPro)
Tan04g1948 489 Gene3D Phosphorylase Kinase; domain 1 160 261 - -
Tan04g1948 489 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524(InterPro)
Tan04g1948 489 Gene3D Transferase(Phosphotransferase) domain 1 262 467 - -
Tan04g1948 489 Pfam Protein kinase domain 190 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1948 489 SUPERFAMILY Protein kinase-like (PK-like) 169 457 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1948 Tan-Chr4:68032580 Tan04g1954 Tan-Chr4:68267810 5.60E-155 dispersed
Tan04g1946 Tan-Chr4:67790546 Tan04g1948 Tan-Chr4:68032580 6.30E-107 proximal
Tan04g1948 Tan-Chr4:68032580 Tan04g1949 Tan-Chr4:68032580 2.40E-198 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67475 PF00069 Pkinase 5.10E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1948 - - - 0.0