Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1949 ATGATCATATACATCGGAAGAAGACGTATGCTATCAAGAAAAACATTACCAACATTCAAGGAGAGAATGATAAATATGGAATCCATAATGAATTCTGGGCCAAAGCGATATCATTATTCGGAGATCAAGAAAATGACCAACTCATTTTCAAACAAAGTAGGAGAAGGAGGATATGGCATTGTCTACCGAGGTAAACTAGATAATGGTACCCTCGTAGCTATAAAAGTACTAAAGGTGTCAAAAAGTGATGGTGAAGATTTCATAAATGAAGTTATGAGTATTAGCAAAACATCACATGTTAATATAGTTAGTCTTTTAGGATTTTCTTACAACTCAAAGGAAATAGCGCTTGTATATGAATTCATGTCCAATGGTTCACTCGATAGCTTCATCTCTAGAAGTCACAACCTTGAGATGAAAACCGTTCATAGAATCGTTAAAGGCGTGGCAAAAGGATTAGAGTATCTACATTGCGGTTGTAGTACAAGGATAGTCCATTTCGACATAAAGCCTCAAAACATCCTTTTGGATGAAGATTTCAACCCTAAAATTTCTGACTTTGGTCTTGCAAAGCTTTGCAAACGAAAGGATAGTGTGATTTCAATGATGGGTGCAAGGGGGACAGTCGGGTTCATAGCACCAGAAGTTTTTAGTCGTGCATTTGGAATTGTCTCGTACAAATCTGATGTGTATAGCTATGGAATGTTGGTTCTTGATCTTGTATTGGGTGGAACAAGAAACCCTAGTTCAAAATTTGTATCTGATGTGAGTGAAATGTACTTTCCAAATTGGGTTTTTAAAACATTTGAAGGAGGTAAGGCTTTAAGAACAAATCAGAGTTTGATAGAGGAAGATGAAGAAATGGAGAAGAAGATGGTTATGGTAGGTTTGTGGTGCATTCAAACATCTCCGCTCGATAGGCCTTCAATGACTAAAGTATTGGAGATGTTGGATGGAAGCATTCATTCATTGCAAATGCCTCCAAGATCTTCCTTGGTTCCCCCTCGGCAATCTACCTTTGAATCATCATCCTCAGATGAGATTGTTTAA 1050 37.43 MIIYIGRRRMLSRKTLPTFKERMINMESIMNSGPKRYHYSEIKKMTNSFSNKVGEGGYGIVYRGKLDNGTLVAIKVLKVSKSDGEDFINEVMSISKTSHVNIVSLLGFSYNSKEIALVYEFMSNGSLDSFISRSHNLEMKTVHRIVKGVAKGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKDSVISMMGARGTVGFIAPEVFSRAFGIVSYKSDVYSYGMLVLDLVLGGTRNPSSKFVSDVSEMYFPNWVFKTFEGGKALRTNQSLIEEDEEMEKKMVMVGLWCIQTSPLDRPSMTKVLEMLDGSIHSLQMPPRSSLVPPRQSTFESSSSDEIV 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68032580 68045616 + Tan0006338.2 Tan04g1949 750353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1949 349 PANTHER RUST RESISTANCE KINASE LR10-RELATED 25 338 IPR045874 GO:0004672(InterPro)
Tan04g1949 349 SMART serkin_6 47 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1949 349 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1949 349 Gene3D Transferase(Phosphotransferase) domain 1 122 327 - -
Tan04g1949 349 Gene3D Phosphorylase Kinase; domain 1 19 121 - -
Tan04g1949 349 PIRSF ILK 11 328 - -
Tan04g1949 349 SUPERFAMILY Protein kinase-like (PK-like) 29 317 IPR011009 -
Tan04g1949 349 MobiDBLite consensus disorder prediction 326 349 - -
Tan04g1949 349 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Tan04g1949 349 FunFam PR5-like receptor kinase 122 329 - -
Tan04g1949 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1949 349 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1946 Tan-Chr4:67790546 Tan04g1949 Tan-Chr4:68032580 6.30E-107 dispersed
Tan04g1949 Tan-Chr4:68032580 Tan04g1954 Tan-Chr4:68267810 4.00E-155 dispersed
Tan04g1948 Tan-Chr4:68032580 Tan04g1949 Tan-Chr4:68032580 2.40E-198 tandem
Tan04g1949 Tan-Chr4:68032580 Tan04g1950 Tan-Chr4:68124858 1.30E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67476 PF00069 Pkinase 1.90E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1949 - - - 0.0