Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1950 ATGAGTATTGAATCGATAATGGGTTATGGACCAAAGCGGTATCATTATTCAGAGATAAAGAAAATGACGAATTCATTTTCAGATAAAGTAGGTGAAGGTGGATATGGCACTGTCTATCGAGGTAAACTAGTTGATGGTACCCTTGTAGCAATAAAAGTTCTAAAGATGTCCAAAGGCAATAGTGAAGATTTCATAAATGAAATTGTGAGTATTAGCAGAACTTTTCATGTTAATATAGTTAGTCTTTTAGGGTTTTCTTATAGCTCAAAGAAAATAGCTCTAGTTTATGAATTTATGGCCAATGGATCACTTGATAGGTTCATGTCTAGAAGTTGCAATCTTGATATGGAAACGCTTCATAAAATCATCGTAGGCGTGGCAAGAGGGTTAGAATATCTACACTATGGTTGTAGTACGAGGATAGTGCATTTCGATATAAAGCCGCAAAACATTCTGTTGGACAAAGATTTCAACCCTAAAATTTCTGACTTTGGTCTTGCGAAGCTCTGCAAAAAGGAGAGTGCAATTTCAATATTGGGAACCCGCGGAACTGTTGGCTTCATTGCACCAAAAGTTTTTAGTCGTTTATTTGGAACTGTCTCATACAAATCTGATGTGTATAGCTATGGGATGTTGGTTCTCGACCTCGTATTGGGAGGAATAAGAAATCCGAATTCAAAATTATTATCTAATGAAAGTGAACTGTACTTTCCAAATTGGATTTTCAAGAATTTTGAAATGGGTAACAACACTATAAGGATTAATAAGAGTTTGATGGCTGAAGACCAAGAAATGGAGAAGAAATTAGTTTTAGTAGGCTTGTGGTGTATTCAAACATCTCCATTAGATAGGCCTTCAATGAGTAGAGTGTTGGCGATGTTAGATGGAAGCATTGACTCCTTGCAAATGCCTCCAAAACCTTCATTGGTTCCTCCTAAGATGTCAACCCAACAATCTACCTATGAATCAATATTATATGATTTTGCTTAA 990 35.96 MSIESIMGYGPKRYHYSEIKKMTNSFSDKVGEGGYGTVYRGKLVDGTLVAIKVLKMSKGNSEDFINEIVSISRTFHVNIVSLLGFSYSSKKIALVYEFMANGSLDRFMSRSCNLDMETLHKIIVGVARGLEYLHYGCSTRIVHFDIKPQNILLDKDFNPKISDFGLAKLCKKESAISILGTRGTVGFIAPKVFSRLFGTVSYKSDVYSYGMLVLDLVLGGIRNPNSKLLSNESELYFPNWIFKNFEMGNNTIRINKSLMAEDQEMEKKLVLVGLWCIQTSPLDRPSMSRVLAMLDGSIDSLQMPPKPSLVPPKMSTQQSTYESILYDFA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68124858 68125847 - Tan0016563.1 Tan04g1950 750354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1950 329 SUPERFAMILY Protein kinase-like (PK-like) 6 294 IPR011009 -
Tan04g1950 329 Gene3D Phosphorylase Kinase; domain 1 4 98 - -
Tan04g1950 329 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524(InterPro)
Tan04g1950 329 FunFam PR5-like receptor kinase 99 306 - -
Tan04g1950 329 Gene3D Transferase(Phosphotransferase) domain 1 99 302 - -
Tan04g1950 329 Pfam Protein kinase domain 27 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1950 329 SMART serkin_6 24 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1950 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1950 329 ProSiteProfiles Protein kinase domain profile. 24 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1950 329 PIRSF ILK 11 304 - -
Tan04g1950 329 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 318 IPR045874 GO:0004672(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1950 Tan-Chr4:68124858 Tan05g2239 Tan-Chr5:73318519 9.20E-93 dispersed
Tan04g1950 Tan-Chr4:68124858 Tan04g1954 Tan-Chr4:68267810 2.70E-153 proximal
Tan04g1949 Tan-Chr4:68032580 Tan04g1950 Tan-Chr4:68124858 1.30E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67477 PF00069 Pkinase 3.80E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1950 - - - 0.0