Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1954 ATGAGTATCGAATCCATAATGAATTATGGACCAAAGCGATATCATTATTCAGAGATAAAAAAAATGACAAACTCTTTTTCAGATAAAATAGGTGAAGGTGGATATGGCACTGTGTACCGAGGTAAACTACTTGATGATACTCCTGTAGCTATAAAAGTTCTAAAGGTTTCAAAAGGAAAGGGTGAAGATTTCATCAATGAAGTTATGAGCATTAGCCGAACTTCACATGTTAATATAGTTAGTCTTTTAGGGTTCTCTTACAACTCAAAGAAAATAGCTCTAGTGTATGAATTTATGGCCAATGGATCGCTCGATAGATTCATGTCTACGAGTCACGATCTTGAGATGAAAACACTTCATAGGATCGTTCTAGGTGTGGCAAGAGGGCTGGAGTACCTACATTGTGGTTGTAGTACAAGGATAGTGCATTTTGATATAAAGCCTCAAAACATCCTCTTGGATGAAGATTTCAACCCTAAAATTTCCGACTTTGGCCTTGCGAAGCTTTGCAAGAGAAAGGAGAGTGCAATTTCAATGTTGGGAACTAGAGGAACTATTGGGTTCATTGCACCCGAAATGTTTAGTCGTTCATTTGGAATTGTCTCGTACAAATCAGATGTATATAGTTATGGAATGTTGGTTCTTGATCTTGTATTAGGAGGAATAAGAAATCCTAATTCAAAATTATTATCGGATGAGAGTGAAATGTACTTTCCAAATTGGATATTCAAGAATTTTGAAATGGGTAAGAGGGTAAGAACAAATCAAAGTTTGATAGAGGACGAAGAAGAACTAGAGAAGAAAATGGTTATGGTAGGTTTGTGGTGCATTCAAACCTTTCCATTAGATAGGCCTTCAATGAGTAAAGTACTGGAGATGTTAGAAGGCAGCACTCACTCCTTGCAAATGCCTCCAAACCCTTCTTTGGTTCCCCCTAAGGTGCCAACCGAAGAATCTACCTCGGAAGAATCCTTATCGTATGGGGTTGTTTAA 993 37.66 MSIESIMNYGPKRYHYSEIKKMTNSFSDKIGEGGYGTVYRGKLLDDTPVAIKVLKVSKGKGEDFINEVMSISRTSHVNIVSLLGFSYNSKKIALVYEFMANGSLDRFMSTSHDLEMKTLHRIVLGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESAISMLGTRGTIGFIAPEMFSRSFGIVSYKSDVYSYGMLVLDLVLGGIRNPNSKLLSDESEMYFPNWIFKNFEMGKRVRTNQSLIEDEEELEKKMVMVGLWCIQTFPLDRPSMSKVLEMLEGSTHSLQMPPNPSLVPPKVPTEESTSEESLSYGVV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68267810 68268802 - Tan0005299.1 Tan04g1954 750358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1954 330 MobiDBLite consensus disorder prediction 313 330 - -
Tan04g1954 330 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524(InterPro)
Tan04g1954 330 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
Tan04g1954 330 ProSiteProfiles Protein kinase domain profile. 24 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1954 330 MobiDBLite consensus disorder prediction 298 330 - -
Tan04g1954 330 FunFam PR5-like receptor kinase 99 306 - -
Tan04g1954 330 PIRSF ILK 7 304 - -
Tan04g1954 330 SMART serkin_6 24 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1954 330 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Tan04g1954 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1954 330 SUPERFAMILY Protein kinase-like (PK-like) 6 295 IPR011009 -
Tan04g1954 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 315 IPR045874 GO:0004672(InterPro)
Tan04g1954 330 Pfam Protein kinase domain 27 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1948 Tan-Chr4:68032580 Tan04g1954 Tan-Chr4:68267810 5.60E-155 dispersed
Tan04g1949 Tan-Chr4:68032580 Tan04g1954 Tan-Chr4:68267810 4.00E-155 dispersed
Tan04g1954 Tan-Chr4:68267810 Tan05g2239 Tan-Chr5:73318519 5.80E-95 dispersed
Tan04g1950 Tan-Chr4:68124858 Tan04g1954 Tan-Chr4:68267810 2.70E-153 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67478 PF00069 Pkinase 1.70E-48 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1954 - - - 0.0