Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1996 | ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGACGACGACGATGGGGATCTCGATTTTCTCCTTCCGCCCAAGCAAGTTATCGGACCGGACGAAAATGGATTGAAGAGAACTGTTGAATATCAGTTTAACGAAGATGGCAACAAGGTCAAAATCACAACGACCTCTCGAACTCGCAAGCTCGCCCATGCTCGCCTGAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTACATGAAGACGTCGGCAGTAGACTCACTATGGTTTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGACCTGGCACAACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCTACAACTGCTGCACCTGGTGCAACGAAGGGAGCATATGTTCCACCAGGGATGAGAGCAGGGGCAGAGAGGACTGGAACCGACATGCGACGTAGGAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCCGAGGACACTAGAGAGCCTGATTTGCATGAGCTTTTCCGACCTTTTGGTGCTGTGAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGCGAGGATGCACAAAGGTCAATTAACAAACTCAATGGATATGGATATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA | 867 | 49.6 | MVQPTNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKRTVEYQFNEDGNKVKITTTSRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 70772757 | 70774564 | - | Tan0013688.1 | Tan04g1996 | 750400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1996 | 288 | Gene3D | - | 169 | 288 | IPR012677 | - | |
Tan04g1996 | 288 | CDD | RRM_eIF3G_like | 208 | 283 | IPR034240 | - | |
Tan04g1996 | 288 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 9 | 287 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Tan04g1996 | 288 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 30 | 157 | IPR024675 | - | |
Tan04g1996 | 288 | CDD | eIF3G | 37 | 156 | IPR024675 | - | |
Tan04g1996 | 288 | PIRSF | Transl_init_eIF-3_RNA-bind | 1 | 288 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Tan04g1996 | 288 | Pfam | RNA recognition motif | 209 | 275 | IPR000504 | GO:0003723(InterPro) | |
Tan04g1996 | 288 | SUPERFAMILY | RNA-binding domain, RBD | 205 | 286 | IPR035979 | GO:0003676(InterPro) | |
Tan04g1996 | 288 | SMART | rrm1_1 | 208 | 281 | IPR000504 | GO:0003723(InterPro) | |
Tan04g1996 | 288 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 43 | 283 | - | - | |
Tan04g1996 | 288 | FunFam | Eukaryotic translation initiation factor 3 subunit G | 172 | 288 | - | - | |
Tan04g1996 | 288 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 285 | IPR000504 | GO:0003723(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1996 | Tan-Chr4:70772757 | Tan05g3362 | Tan-Chr5:85392531 | 5.10E-156 | dispersed | |
Tan04g1996 | Tan-Chr4:70772757 | Tan04g1997 | Tan-Chr4:70911473 | 6.40E-42 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1996 | K03248 | - | csv:101207022 | 545.428 |