Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1996 ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGACGACGACGATGGGGATCTCGATTTTCTCCTTCCGCCCAAGCAAGTTATCGGACCGGACGAAAATGGATTGAAGAGAACTGTTGAATATCAGTTTAACGAAGATGGCAACAAGGTCAAAATCACAACGACCTCTCGAACTCGCAAGCTCGCCCATGCTCGCCTGAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTACATGAAGACGTCGGCAGTAGACTCACTATGGTTTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGACCTGGCACAACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCTACAACTGCTGCACCTGGTGCAACGAAGGGAGCATATGTTCCACCAGGGATGAGAGCAGGGGCAGAGAGGACTGGAACCGACATGCGACGTAGGAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCCGAGGACACTAGAGAGCCTGATTTGCATGAGCTTTTCCGACCTTTTGGTGCTGTGAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGCGAGGATGCACAAAGGTCAATTAACAAACTCAATGGATATGGATATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA 867 49.6 MVQPTNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKRTVEYQFNEDGNKVKITTTSRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70772757 70774564 - Tan0013688.1 Tan04g1996 750400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1996 288 Gene3D - 169 288 IPR012677 -
Tan04g1996 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Tan04g1996 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Tan04g1996 288 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
Tan04g1996 288 CDD eIF3G 37 156 IPR024675 -
Tan04g1996 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Tan04g1996 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Tan04g1996 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Tan04g1996 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Tan04g1996 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Tan04g1996 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Tan04g1996 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1996 Tan-Chr4:70772757 Tan05g3362 Tan-Chr5:85392531 5.10E-156 dispersed
Tan04g1996 Tan-Chr4:70772757 Tan04g1997 Tan-Chr4:70911473 6.40E-42 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1996 K03248 - csv:101207022 545.428