Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1998 ATGCCGGAAAAAACCATGCCGATAGATTACGTCATGGAAGCCGCCTCTGGTCCTCACTTCTCCGGCCTCCGACTCGACGGACTTCTCTCCTCTCCGACGTCTTCCTCAACTTCCTCTCCGGCTCACCACTATTCTCTTTCCTCTTCCCTTGCACAGGTCGATGGGAACTCTCCTAAGCAGCCCTTTGTCATCGGTGTTTCTGGAGGTACTGCATCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCATAGGGTTGTGCTGGTCAATCAGGACACGTTTTACCGCGGGTTGACAGCTGAGGAACTTGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACGGAGCAGCTTGTGGATTGCATCGAGAAGCTAAAGAGTGGGCAGTCTTACCATGTCCCACTTTATGATTTTAAAACTCATCAACGCTGTCTAGATAGCTTTCGACAGGTAAATGCATCTAATGTAATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACTCAGATCCTGATGTGAGACTTGCTCGTAGAATTAGACGAGATACGGTAGAAAGGGGCAGGGACATTAACTCCGTCCTTGAACAGTATGCGAAGTTTGTAAAACCTTCTTTTGATGATTTTGTTCTGCCGTCAAAGAAGTACGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAGTTAGGCCAGCATGACCTTTGTAAAATATATCCCAATGTTACTATCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTGTTCTATTCAGATCGACTTATTCGTCTGGTTTTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACGGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAATTATGTGGTGTATCCATCATTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGATGCAGCTGATATACCAGAAATTGCCCAACGACATATCAGAGCGACATGTCCTACTGCTAGATCCTGTTCTTGCTACTGGCAACTCGGCTAATCAAGCAATTGATCTTCTCATACAGAAGGGAGTTCCTGAATCGCACATCATATTCCTCAACTTGATCTCTGCCCCAGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGATATTGATGTTGGATTAAATGAAGAGTATCGTGTCATACCCGGTATGGGTGAATTTGGCGATCGTTACTTCGGAACCGATGATTAA 1449 43.96 MPEKTMPIDYVMEAASGPHFSGLRLDGLLSSPTSSSTSSPAHHYSLSSSLAQVDGNSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDTFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYHVPLYDFKTHQRCLDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDSDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPSFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTIIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVLEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGMQLIYQKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSDIDVGLNEEYRVIPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71030693 71035758 + Tan0007303.1 Tan04g1998 750402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1998 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Tan04g1998 482 Gene3D - 265 480 IPR029057 -
Tan04g1998 482 PANTHER URIDINE KINASE 57 415 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Tan04g1998 482 CDD UMPK 63 261 IPR000764 -
Tan04g1998 482 Gene3D - 57 264 IPR027417 -
Tan04g1998 482 FunFam Uridine kinase 58 264 - -
Tan04g1998 482 NCBIfam uridine kinase 61 261 IPR000764 -
Tan04g1998 482 FunFam Uridine kinase 265 480 - -
Tan04g1998 482 PRINTS Uridine kinase signature 136 151 - -
Tan04g1998 482 PRINTS Uridine kinase signature 207 218 - -
Tan04g1998 482 PRINTS Uridine kinase signature 193 203 - -
Tan04g1998 482 PRINTS Uridine kinase signature 229 242 - -
Tan04g1998 482 PRINTS Uridine kinase signature 61 78 - -
Tan04g1998 482 PRINTS Uridine kinase signature 91 102 - -
Tan04g1998 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Tan04g1998 482 CDD PRTases_typeI 338 456 IPR000836 -
Tan04g1998 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Tan04g1998 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381(InterPro)
Tan04g1998 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1998 K00876 - - csv:101207261 892.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1998 Tan-Chr4:71030693 Tan07g0116 Tan-Chr7:3395157 1.00E-270 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan05g1228 . 65 551 PRT Gene Family AT2G16570 84.0 5.9e-241 830.9
Tan05g1228 . 71 551 PRT Gene Family AT4G34740 84.9 1.1e-239 826.6
Tan05g1228 . 71 524 PRT Gene Family AT4G38880 75.2 5.0e-197 684.9
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan07g1841 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan07g1842 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan01g2010 . 5 97 PRT Gene Family AT4G22570 84.9 8.2e-43 170.2
Tan02g1742 . 5 97 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g1743 . 78 170 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g2731 . 11 100 PRT Gene Family AT4G22570 78.9 3.0e-37 151.8
Tan07g1841 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan07g1842 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan01g2010 . 1 96 PRT Gene Family AT4G12440 82.3 1.3e-39 159.5
Tan02g1742 . 1 96 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g1743 . 74 169 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 4 99 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan11g1087 . 1 186 PRT Gene Family AT1G71750 67.0 2.1e-71 266.2
Tan01g3234 . 16 469 PRT Gene Family AT1G55810 85.5 1.9e-226 782.3
Tan07g0116 . 19 482 PRT Gene Family AT1G55810 74.6 4.3e-202 701.4
Tan04g1998 . 19 482 PRT Gene Family AT1G55810 73.1 2.6e-199 692.2
Tan01g3234 . 66 468 PRT Gene Family AT3G27440 77.4 5.8e-185 644.4
Tan07g0116 . 80 482 PRT Gene Family AT3G27440 75.4 1.5e-180 629.8
Tan04g1998 . 80 482 PRT Gene Family AT3G27440 74.7 9.0e-178 620.5
Tan07g0116 . 1 482 PRT Gene Family AT3G27190 87.0 1.7e-249 859.0
Tan04g1998 . 1 482 PRT Gene Family AT3G27190 84.9 2.9e-244 841.6
Tan01g3234 . 3 468 PRT Gene Family AT3G27190 74.6 1.3e-209 726.5
Tan03g0911 . 3 289 PRT Gene Family AT3G53900 68.3 1.3e-109 393.7
Tan03g0913 . 3 276 PRT Gene Family AT3G53900 66.4 8.3e-101 364.4
Tan03g0912 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan03g0914 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan01g3234 . 1 469 PRT Gene Family AT4G26510 84.3 1.5e-234 809.3
Tan07g0116 . 7 482 PRT Gene Family AT4G26510 76.1 1.5e-213 739.6
Tan04g1998 . 11 482 PRT Gene Family AT4G26510 74.4 2.5e-208 722.2
Tan07g0116 . 1 482 PRT Gene Family AT5G40870 87.2 7.9e-250 860.1
Tan04g1998 . 1 482 PRT Gene Family AT5G40870 85.1 9.3e-243 836.6
Tan01g3234 . 3 471 PRT Gene Family AT5G40870 73.7 2.0e-208 722.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61