Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2009 | ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATCCGACCTTGTTTGCAGTGGATCAAGAGCCCTGAATCTCAGGCCAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCTGAGCATCTACGGCCTGCGATTTTTAGATCTCTTCTGTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCGGTTGAGGCGGTTCTTAAAGGCGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCGACCGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCATGTTTCCAAGGATGAAAACTCCGCCGCCTCCAACGACGGTGGAGCCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGTTCGCCCGGCAAAGCGAAAGCTAGTAAAGGAATCGCCTCCGCCATCGGTGACTCGACTCGGCGACTGTGCTCCTCCACCGAGTTGAACCGGTCTTCGAGCGGCGAGTCGTCGCTAAGTCACCAATCCGACTCGCCGCATCTGGAGCACGAAAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACAGCGGAGGTTTCCCCTCCTCCGCTGCCGTCGGCTTTGTTCCGATCGGAGTCCACTTCCGTTCAAAAAACCACCGGTCACGGCGGCGTCGCGATGGTAGTTCCGGAAAGTGAATTAGCTCTGGAACTAACCCTGGGGATAGAGCCGGTGTCACGTGCCCAACACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCGGACGGTGGGTTCAGGCCCAATAACGAAGCGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCTGA | 924 | 55.52 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGANRRVKTRCRFKRSPGKAKASKGIASAIGDSTRRLCSSTELNRSSSGESSLSHQSDSPHLEHESKETESMISVETAEVSPPPLPSALFRSESTSVQKTTGHGGVAMVVPESELALELTLGIEPVSRAQHVIPMKKRKIEADGGFRPNNEACNTVLGLDFAA | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 71656633 | 71658082 | - | Tan0012839.1 | Tan04g2009 | 750413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2009 | 307 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 268 | - | GO:0010468(PANTHER) | |
Tan04g2009 | 307 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Tan04g2009 | 307 | MobiDBLite | consensus disorder prediction | 134 | 234 | - | - | |
Tan04g2009 | 307 | PIRSF | AS2 | 1 | 301 | IPR017414 | - | |
Tan04g2009 | 307 | MobiDBLite | consensus disorder prediction | 177 | 200 | - | - | |
Tan04g2009 | 307 | MobiDBLite | consensus disorder prediction | 201 | 216 | - | - | |
Tan04g2009 | 307 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4707 | Tan-Chr1:112959317 | Tan04g2009 | Tan-Chr4:71656633 | 2.40E-38 | dispersed | |
Tan03g1649 | Tan-Chr3:72595636 | Tan04g2009 | Tan-Chr4:71656633 | 4.30E-44 | dispersed | |
Tan04g0849 | Tan-Chr4:7300669 | Tan04g2009 | Tan-Chr4:71656633 | 1.90E-54 | dispersed | |
Tan04g2009 | Tan-Chr4:71656633 | Tan09g1917 | Tan-Chr9:70201078 | 8.30E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27290 | PF03195 | LOB | 1.20E-24 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2009 | - | - | - | 0.0 |