Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2009 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATCCGACCTTGTTTGCAGTGGATCAAGAGCCCTGAATCTCAGGCCAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCTGAGCATCTACGGCCTGCGATTTTTAGATCTCTTCTGTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCGGTTGAGGCGGTTCTTAAAGGCGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCGACCGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCATGTTTCCAAGGATGAAAACTCCGCCGCCTCCAACGACGGTGGAGCCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGTTCGCCCGGCAAAGCGAAAGCTAGTAAAGGAATCGCCTCCGCCATCGGTGACTCGACTCGGCGACTGTGCTCCTCCACCGAGTTGAACCGGTCTTCGAGCGGCGAGTCGTCGCTAAGTCACCAATCCGACTCGCCGCATCTGGAGCACGAAAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACAGCGGAGGTTTCCCCTCCTCCGCTGCCGTCGGCTTTGTTCCGATCGGAGTCCACTTCCGTTCAAAAAACCACCGGTCACGGCGGCGTCGCGATGGTAGTTCCGGAAAGTGAATTAGCTCTGGAACTAACCCTGGGGATAGAGCCGGTGTCACGTGCCCAACACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCGGACGGTGGGTTCAGGCCCAATAACGAAGCGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCTGA 924 55.52 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGANRRVKTRCRFKRSPGKAKASKGIASAIGDSTRRLCSSTELNRSSSGESSLSHQSDSPHLEHESKETESMISVETAEVSPPPLPSALFRSESTSVQKTTGHGGVAMVVPESELALELTLGIEPVSRAQHVIPMKKRKIEADGGFRPNNEACNTVLGLDFAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71656633 71658082 - Tan0012839.1 Tan04g2009 750413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2009 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 268 - GO:0010468(PANTHER)
Tan04g2009 307 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tan04g2009 307 MobiDBLite consensus disorder prediction 134 234 - -
Tan04g2009 307 PIRSF AS2 1 301 IPR017414 -
Tan04g2009 307 MobiDBLite consensus disorder prediction 177 200 - -
Tan04g2009 307 MobiDBLite consensus disorder prediction 201 216 - -
Tan04g2009 307 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4707 Tan-Chr1:112959317 Tan04g2009 Tan-Chr4:71656633 2.40E-38 dispersed
Tan03g1649 Tan-Chr3:72595636 Tan04g2009 Tan-Chr4:71656633 4.30E-44 dispersed
Tan04g0849 Tan-Chr4:7300669 Tan04g2009 Tan-Chr4:71656633 1.90E-54 dispersed
Tan04g2009 Tan-Chr4:71656633 Tan09g1917 Tan-Chr9:70201078 8.30E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g884 . . . . . . . . Cmo14g00825 . . Cma14g00811 . . . Cpe03g00701 . . . . . . . . . . . . . . . Cone11ag0317 . . . . . . . . . . . . . . . Sed05g2663 . . . . . . Cpe02g01431 . Bhi01g01915 Tan04g2009 Cmetu06g0556 Lac11g0176 Hepe02g0980 . . . . . . . . . . Csa03g02065 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0946 . 16 238 AS2 family AT1G65620 68.0 1.1e-72 270.4
Tan07g1017 . 2 110 AS2 family AT1G65620 81.7 9.3e-48 187.6
Tan09g2289 . 3 186 AS2 family AT1G65620 51.6 4.3e-45 178.7
Tan07g1392 . 21 131 AS2 family AT1G65620 70.3 3.1e-43 172.6
Tan11g0653 . 1 138 AS2 family AT1G65620 59.3 4.0e-43 172.2
Tan05g1980 . 1 119 AS2 family AT1G65620 68.9 2.5e-40 162.9
Tan11g0319 . 40 148 AS2 family AT1G65620 62.4 1.6e-36 150.2
Tan07g1017 . 1 131 AS2 family AT5G66870 83.2 8.3e-59 224.9
Tan08g0946 . 19 127 AS2 family AT5G66870 77.1 1.3e-43 174.5
Tan09g2289 . 1 113 AS2 family AT5G66870 69.0 1.1e-39 161.4
Tan07g1392 . 25 131 AS2 family AT5G66870 68.2 4.3e-39 159.5
Tan11g0653 . 1 115 AS2 family AT5G66870 64.3 9.5e-39 158.3
Tan05g1980 . 1 119 AS2 family AT5G66870 64.7 4.0e-37 152.9
Tan11g0292 . 9 115 AS2 family AT5G66870 65.4 1.2e-36 151.4
Tan05g0519 . 1 122 AS2 family AT5G66870 56.6 2.0e-36 150.6
Tan07g1017 . 4 118 AS2 family AT2G23660 69.6 3.3e-44 176.4
Tan08g0946 . 21 127 AS2 family AT2G23660 69.2 1.1e-39 161.4
Tan09g2289 . 8 113 AS2 family AT2G23660 65.1 9.4e-39 158.3
Tan07g1392 . 25 131 AS2 family AT2G23660 61.7 5.2e-37 152.5
Tan11g0653 . 4 127 AS2 family AT3G27650 80.8 5.3e-54 208.0
Tan07g1392 . 22 132 AS2 family AT3G27650 84.7 2.9e-52 202.2
Tan09g2289 . 4 114 AS2 family AT3G27650 79.3 9.7e-48 187.2
Tan05g1980 . 15 120 AS2 family AT3G27650 73.6 1.0e-41 167.2
Tan08g0946 . 18 127 AS2 family AT3G27650 68.2 1.0e-41 167.2
Tan07g1017 . 4 112 AS2 family AT3G27650 68.8 2.6e-40 162.5
Tan09g2289 . 3 175 AS2 family AT5G63090 67.6 4.2e-58 221.9
Tan07g1392 . 20 134 AS2 family AT5G63090 82.6 3.8e-51 198.7
Tan11g0653 . 1 120 AS2 family AT5G63090 81.5 8.4e-51 197.6
Tan05g1980 . 1 126 AS2 family AT5G63090 74.6 2.1e-49 193.0
Tan08g0946 . 18 137 AS2 family AT5G63090 70.8 2.4e-45 179.5
Tan07g1017 . 2 110 AS2 family AT5G63090 70.6 1.3e-40 163.7
Tan05g2776 . 14 125 AS2 family AT5G63090 66.1 5.7e-39 158.3
Tan05g0608 . 12 115 AS2 family AT5G63090 68.3 2.1e-38 156.4
Tan04g1350 . 4 106 AS2 family AT5G63090 69.9 1.8e-37 153.3
Tan05g0519 . 5 110 AS2 family AT5G63090 64.2 1.2e-36 150.6
Tan02g0063 . 18 121 AS2 family AT5G63090 65.4 1.5e-36 150.2
Tan04g1350 . 3 114 AS2 family AT2G30130 92.0 3.8e-54 208.8
Tan05g0519 . 2 142 AS2 family AT2G30130 71.6 6.0e-52 201.4
Tan05g0608 . 12 123 AS2 family AT2G30130 75.0 3.2e-45 179.1
Tan05g2776 . 12 129 AS2 family AT2G30130 68.6 2.1e-44 176.4
Tan02g0063 . 18 124 AS2 family AT2G30130 72.0 8.2e-41 164.5
Tan04g1404 . 48 150 AS2 family AT2G30130 70.9 3.8e-38 155.6
Tan11g0319 . 43 145 AS2 family AT2G30130 70.9 6.5e-38 154.8
Tan09g2289 . 8 127 AS2 family AT2G30130 61.7 1.1e-37 154.1
Tan08g0946 . 22 124 AS2 family AT2G30130 67.0 1.2e-36 150.6
Tan07g1392 . 26 129 AS2 family AT2G30130 65.4 1.6e-36 150.2
Tan05g2776 . 1 170 AS2 family AT1G31320 75.6 5.4e-68 254.6
Tan05g0608 . 1 168 AS2 family AT1G31320 74.0 9.5e-65 243.8
Tan02g0063 . 7 126 AS2 family AT1G31320 71.7 4.4e-46 181.8
Tan04g1350 . 2 122 AS2 family AT1G31320 68.3 4.1e-44 175.3
Tan05g0519 . 6 116 AS2 family AT1G31320 71.2 2.3e-42 169.5
Tan04g1404 . 48 157 AS2 family AT1G31320 65.5 2.6e-38 156.0
Tan11g0319 . 43 156 AS2 family AT1G31320 62.3 1.7e-37 153.3
Tan09g2289 . 9 120 AS2 family AT1G31320 62.5 1.4e-36 150.2
Tan11g0811 . 11 128 AS2 family AT2G28500 69.5 9.5e-44 174.5
Tan01g2596 . 6 156 AS2 family AT2G28500 66.9 8.0e-43 171.4
Tan01g2599 . 12 129 AS2 family AT2G28500 68.6 5.2e-42 168.7
Tan04g0396 . 53 144 AS2 family AT2G28500 88.0 5.2e-42 168.7
Tan05g0284 . 31 123 AS2 family AT2G28500 84.9 3.4e-41 166.0
Tan05g0519 . 6 116 AS2 family AT2G28500 65.8 4.6e-38 155.6
Tan04g1350 . 5 113 AS2 family AT2G28500 66.1 1.1e-36 151.0
Tan05g0608 . 11 120 AS2 family AT2G28500 66.4 1.1e-36 151.0
Tan04g0396 . 53 207 AS2 family AT1G07900 68.8 1.0e-43 174.1
Tan05g0284 . 31 192 AS2 family AT1G07900 64.5 2.3e-43 172.9
Tan01g2599 . 12 177 AS2 family AT1G07900 62.7 3.9e-43 172.2
Tan01g2596 . 33 156 AS2 family AT1G07900 75.0 3.3e-42 169.1
Tan11g0811 . 11 142 AS2 family AT1G07900 59.1 1.4e-40 163.7
Tan05g0608 . 1 168 AS2 family AT1G16530 58.4 2.9e-47 185.7
Tan05g2776 . 13 170 AS2 family AT1G16530 54.7 1.8e-41 166.4
Tan02g0063 . 18 123 AS2 family AT1G16530 72.0 7.0e-41 164.5
Tan05g0519 . 2 149 AS2 family AT1G16530 53.9 5.0e-39 158.3
Tan04g1350 . 5 110 AS2 family AT1G16530 68.2 3.6e-37 152.1
Tan04g1404 . 10 162 AS2 family AT2G30340 71.4 7.9e-58 221.5
Tan11g0319 . 12 157 AS2 family AT2G30340 71.2 2.3e-57 219.9
Tan05g0608 . 9 120 AS2 family AT2G30340 60.7 1.7e-36 150.6
Tan04g1404 . 32 165 AS2 family AT2G40470 83.9 9.6e-61 230.7
Tan11g0319 . 24 157 AS2 family AT2G40470 83.2 4.0e-59 225.3
Tan05g0608 . 9 147 AS2 family AT2G40470 56.6 6.5e-41 164.9
Tan05g2776 . 15 125 AS2 family AT2G40470 65.8 6.1e-39 158.3
Tan02g0063 . 18 137 AS2 family AT2G40470 60.0 1.5e-37 153.7
Tan05g0519 . 6 123 AS2 family AT2G40470 58.5 1.9e-37 153.3
Tan11g0292 . 1 120 AS2 family AT3G11090 78.3 2.9e-47 185.7
Tan07g2229 . 1 117 AS2 family AT2G42440 71.8 5.9e-44 175.3
Tan06g1134 . 7 118 AS2 family AT2G42440 71.4 3.2e-42 169.5
Tan06g2154 . 27 136 AS2 family AT2G42440 65.2 3.1e-37 152.9
Tan07g2230 . 7 117 AS2 family AT2G42440 66.7 3.1e-37 152.9
Tan06g1134 . 4 127 AS2 family AT3G58190 73.8 5.1e-47 185.3
Tan07g2229 . 4 117 AS2 family AT3G58190 76.3 3.3e-46 182.6
Tan06g2154 . 27 125 AS2 family AT3G58190 74.7 6.0e-40 161.8
Tan07g2230 . 1 117 AS2 family AT3G58190 65.8 8.7e-39 157.9
Tan04g0267 . 6 115 AS2 family AT3G58190 68.2 5.6e-38 155.2
Tan10g0350 . 19 130 AS2 family AT3G58190 64.3 8.1e-37 151.4
Tan10g1658 . 42 159 AS2 family AT3G58190 61.9 1.1e-36 151.0
Tan07g2230 . 4 215 AS2 family AT2G42430 50.4 2.2e-51 199.9
Tan06g2154 . 27 129 AS2 family AT2G42430 74.8 1.4e-40 164.1
Tan07g2229 . 3 94 AS2 family AT2G42430 79.3 2.2e-38 156.8
Tan10g0350 . 6 121 AS2 family AT2G42430 65.5 2.8e-38 156.4
Tan10g1658 . 41 157 AS2 family AT2G42430 64.1 1.1e-37 154.5
Tan06g2154 . 27 236 AS2 family AT4G00220 59.4 2.7e-59 226.1
Tan10g0350 . 19 181 AS2 family AT4G00220 58.9 5.3e-47 185.3
Tan06g2155 . 35 217 AS2 family AT4G00220 55.6 5.3e-39 158.7
Tan06g2154 . 27 236 AS2 family AT2G45420 69.7 6.4e-73 271.6
Tan10g0350 . 19 191 AS2 family AT2G45420 55.5 1.1e-51 201.1
Tan07g2230 . 11 113 AS2 family AT2G45420 78.6 9.1e-43 171.4
Tan10g1658 . 42 148 AS2 family AT2G45420 74.8 6.5e-41 165.2
Tan06g1134 . 12 118 AS2 family AT2G45420 68.2 2.1e-39 160.2
Tan06g2155 . 35 124 AS2 family AT2G45420 78.9 2.7e-39 159.8
Tan07g2229 . 7 96 AS2 family AT2G45420 75.6 2.2e-36 150.2
Tan10g1658 . 42 155 AS2 family AT3G03760 86.0 1.8e-49 193.7
Tan06g2154 . 27 128 AS2 family AT3G03760 81.4 1.5e-40 164.1
Tan07g2230 . 7 112 AS2 family AT3G03760 72.6 7.0e-38 155.2
Tan10g0350 . 11 125 AS2 family AT3G03760 67.0 2.7e-37 153.3
Tan06g2154 . 27 138 AS2 family AT4G00210 72.3 1.2e-43 174.1
Tan10g0350 . 18 147 AS2 family AT4G00210 59.5 2.1e-40 163.3
Tan06g1134 . 12 116 AS2 family AT4G00210 66.7 1.9e-38 156.8
Tan07g2230 . 1 113 AS2 family AT4G00210 61.9 2.2e-37 153.3
Tan06g2154 . 27 223 AS2 family AT2G45410 50.3 1.3e-46 183.7
Tan06g2155 . 34 231 AS2 family AT2G45410 52.0 2.4e-45 179.5
Tan10g0350 . 12 122 AS2 family AT2G45410 70.3 1.2e-44 177.2
Tan07g2230 . 7 113 AS2 family AT2G45410 64.5 9.3e-37 151.0
Tan06g1134 . 12 116 AS2 family AT2G45410 61.9 1.2e-36 150.6
Tan04g0267 . 8 118 AS2 family AT5G06080 73.9 1.2e-43 173.7
Tan06g0165 . 33 141 AS2 family AT3G13850 76.1 2.4e-43 173.3
Tan04g2009 . 1 159 AS2 family AT1G68510 65.9 4.0e-58 222.2
Tan09g1917 . 1 165 AS2 family AT1G68510 61.1 4.6e-54 208.8
Tan04g0849 . 1 154 AS2 family AT1G68510 60.5 5.2e-50 195.3
Tan03g1649 . 1 104 AS2 family AT1G68510 62.5 1.6e-38 157.1
Tan01g4707 . 1 104 AS2 family AT1G68510 66.3 1.7e-37 153.7
Tan09g1917 . 1 134 AS2 family AT1G67100 75.7 2.5e-60 229.6
Tan04g0849 . 1 131 AS2 family AT1G67100 67.6 2.3e-50 196.4
Tan03g1649 . 1 110 AS2 family AT1G67100 66.4 7.3e-44 174.9
Tan01g4707 . 1 110 AS2 family AT1G67100 62.7 1.6e-38 157.1
Tan04g2009 . 1 303 AS2 family AT3G02550 55.7 4.6e-79 292.0
Tan09g1917 . 1 161 AS2 family AT3G02550 72.0 5.5e-64 241.9
Tan04g0849 . 1 140 AS2 family AT3G02550 64.1 2.5e-48 189.9
Tan03g1649 . 1 104 AS2 family AT3G02550 68.3 2.1e-39 160.2
Tan01g4707 . 1 110 AS2 family AT3G02550 63.6 7.5e-37 151.8
Tan03g1649 . 1 203 AS2 family AT5G67420 63.7 3.4e-71 265.8
Tan01g4707 . 1 127 AS2 family AT5G67420 64.4 1.9e-45 180.3
Tan04g2009 . 3 112 AS2 family AT5G67420 66.4 1.3e-43 174.1
Tan09g1917 . 3 112 AS2 family AT5G67420 61.8 3.1e-40 162.9
Tan04g0849 . 3 106 AS2 family AT5G67420 64.4 2.6e-39 159.8
Tan03g1649 . 1 236 AS2 family AT3G49940 58.1 3.7e-70 262.3
Tan01g4707 . 1 127 AS2 family AT3G49940 67.2 8.3e-46 181.4
Tan04g2009 . 3 157 AS2 family AT3G49940 54.1 2.4e-45 179.9
Tan09g1917 . 3 112 AS2 family AT3G49940 62.7 2.3e-40 163.3
Tan04g0849 . 3 106 AS2 family AT3G49940 65.4 4.9e-38 155.6
Tan03g1649 . 1 237 AS2 family AT4G37540 54.1 1.3e-64 243.8
Tan09g1917 . 3 113 AS2 family AT4G37540 63.1 6.6e-40 161.8
Tan04g0849 . 3 107 AS2 family AT4G37540 64.8 1.4e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007819 2 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27290 PF03195 LOB 1.20E-24 No_clan Tan TF