Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2009 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATCCGACCTTGTTTGCAGTGGATCAAGAGCCCTGAATCTCAGGCCAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCTGAGCATCTACGGCCTGCGATTTTTAGATCTCTTCTGTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCGGTTGAGGCGGTTCTTAAAGGCGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCGACCGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCATGTTTCCAAGGATGAAAACTCCGCCGCCTCCAACGACGGTGGAGCCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGTTCGCCCGGCAAAGCGAAAGCTAGTAAAGGAATCGCCTCCGCCATCGGTGACTCGACTCGGCGACTGTGCTCCTCCACCGAGTTGAACCGGTCTTCGAGCGGCGAGTCGTCGCTAAGTCACCAATCCGACTCGCCGCATCTGGAGCACGAAAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACAGCGGAGGTTTCCCCTCCTCCGCTGCCGTCGGCTTTGTTCCGATCGGAGTCCACTTCCGTTCAAAAAACCACCGGTCACGGCGGCGTCGCGATGGTAGTTCCGGAAAGTGAATTAGCTCTGGAACTAACCCTGGGGATAGAGCCGGTGTCACGTGCCCAACACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCGGACGGTGGGTTCAGGCCCAATAACGAAGCGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCTGA 924 55.52 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGANRRVKTRCRFKRSPGKAKASKGIASAIGDSTRRLCSSTELNRSSSGESSLSHQSDSPHLEHESKETESMISVETAEVSPPPLPSALFRSESTSVQKTTGHGGVAMVVPESELALELTLGIEPVSRAQHVIPMKKRKIEADGGFRPNNEACNTVLGLDFAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 71656633 71658082 - Tan0012839.1 Tan04g2009 750413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2009 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 268 - GO:0010468(PANTHER)
Tan04g2009 307 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tan04g2009 307 MobiDBLite consensus disorder prediction 134 234 - -
Tan04g2009 307 PIRSF AS2 1 301 IPR017414 -
Tan04g2009 307 MobiDBLite consensus disorder prediction 177 200 - -
Tan04g2009 307 MobiDBLite consensus disorder prediction 201 216 - -
Tan04g2009 307 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4707 Tan-Chr1:112959317 Tan04g2009 Tan-Chr4:71656633 2.40E-38 dispersed
Tan03g1649 Tan-Chr3:72595636 Tan04g2009 Tan-Chr4:71656633 4.30E-44 dispersed
Tan04g0849 Tan-Chr4:7300669 Tan04g2009 Tan-Chr4:71656633 1.90E-54 dispersed
Tan04g2009 Tan-Chr4:71656633 Tan09g1917 Tan-Chr9:70201078 8.30E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27290 PF03195 LOB 1.20E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2009 - - - 0.0