Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2033 ATGAAGCGAGACCACTCTCACCAATCCCCAAATCCCGCCGCCGGCAAGGCTAAGATATGGCCGGAGGAAGAGGAAGACGACGACAAACTTCTAGCCGCTTTGGGCTACAATGTCCGGTCGTCGGACATGGCCGACGTCGCTCTGAAACTCGAACAGCTCGAAATGGTAATGAGTTTGTCCGAAGAAGACGGAATTTCTCATCTATCTTCGAATACCGTCCATTACAATCCCTCCGATATGTCTTCTTGGGTTCAAAGCATGCTTGCTGAACTCAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATTGCCCAATCAACTTCCTCCTCCATCGCCCCCTTCGCCGACGACTCTGAGTACGATCTCCGAGCAATTCCGGGTGTGGCTGCTTTTCCTCAAATCGATTCCACCAACCCTAGAAAGAGATTGAAGAAATCCGAGTCCGAATCGGTTCTTGTAACCGCTTCTTCTTCGTCGTCGTCGGAGTCGTCGCGCACGGTGGTTCTGGTGGATTCCGCCGAGACCGGCGTATGTCTGGTCCATAGTCTCCTCGCCTGCGCCGATGCCGTCGACACCAACGACCTCAACCTCGCTGACGCGTTGCTGAAACACATCAGAATCCTCGTCGAGGCCCAAGCCGGCGCTATGAGAAAAGTCGCCGGTTATTTCGCCCAGGCTCTCACTCGCCGGATTTACCGATTCCACCCACAGCAGCCCCTCGATTACTCATCTTCATACACCGATCTCCTCCAAATGCATTTCTACGAATCTTGCCCGTATTTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTCGAATCTGTTGGCAGCGCCACAACCGTCCACGTCGTCGATTTCAACCTCCAGCATGGCCTCCAATGGCCGGCGTTGATTCAAGCCCTCGCGCTCCGCCCAGGTGGGCCGCCGACGTTTCATCTCACCGGAATCGGTCCCCCGCCGGGGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCCCAATTCGCGGATACAATCGGCGTGAAATTCGAATTTCGTGGGTATTTCTGCAACAATTTAGCCGATCTAGAACCGTCGATACTCAATTTAGAAACAGAAACCGTCGCCGTAAACTCCATTTTCGAGCTCCACCGGCTACTGGCACATCCGGGCGCGATCGAGAAAGTTCTAACCACAATCAAAGAACTCAACCCCAAAATCGTCACCGTGGTGGAGCAGGTCGCCGACCACAACGGACCATCATTCACAGAGCGATTCACAGAAGCGTTACACTATTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCCGGCGGGGGAGGAGGACGTGGCGAGGTCGGAGGAGTATTTGGGGACGCAAATCTGCAACGTGGTGGCGTGTGAAGGCTCCGACCGGGTCGAGCGGCACGAGACGGTGGCGCAGTGGCGGAGCCGGATGGGTTGGAGTGGGTTCGAGATGGTTCATTTGGGTTCGAACGCGTTCAAGCAGGCGAGCACTTTGCTGGCTCTGTTCGGCGGCGGAAATGGGTACCGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGTTGGCACACTCGGCCGCTGATCGCCACCTCGGCCTGGGCGGTGGCCGCCTGTGCGGGTGGCGAGTCAAGTCAAGATCGCTGCCAACCGTGCATCCGTCCGACCAGTGGGCCTTACGTCGTCGTTGTTGACGCCTCCGTCGTGGGTGGTGTTTCGTCGGATTCGGTTCTACCAACCAATCTTCGGATCTCTGCGAGCCTAGATCTCTTTTGGGACCCATGCTATTCGGACGTTGAAATGTCGAATTTGAGCGATGATGGTTAA 1851 55.27 MKRDHSHQSPNPAAGKAKIWPEEEEDDDKLLAALGYNVRSSDMADVALKLEQLEMVMSLSEEDGISHLSSNTVHYNPSDMSSWVQSMLAELNSPLQSQRIDDPVLAIAQSTSSSIAPFADDSEYDLRAIPGVAAFPQIDSTNPRKRLKKSESESVLVTASSSSSSESSRTVVLVDSAETGVCLVHSLLACADAVDTNDLNLADALLKHIRILVEAQAGAMRKVAGYFAQALTRRIYRFHPQQPLDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSATTVHVVDFNLQHGLQWPALIQALALRPGGPPTFHLTGIGPPPGENSTDGLQEVGSKLAQFADTIGVKFEFRGYFCNNLADLEPSILNLETETVAVNSIFELHRLLAHPGAIEKVLTTIKELNPKIVTVVEQVADHNGPSFTERFTEALHYYSSLFDSLEGSPAGEEDVARSEEYLGTQICNVVACEGSDRVERHETVAQWRSRMGWSGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAVAACAGGESSQDRCQPCIRPTSGPYVVVVDASVVGGVSSDSVLPTNLRISASLDLFWDPCYSDVEMSNLSDDG 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 73062542 73074566 - Tan0000130.1 Tan04g2033 750437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2033 616 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 161 542 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Tan04g2033 616 MobiDBLite consensus disorder prediction 1 22 - -
Tan04g2033 616 Pfam Transcriptional regulator DELLA protein N terminal 28 94 IPR021914 -
Tan04g2033 616 SMART DELLA_2 28 101 - -
Tan04g2033 616 FunFam DELLA protein GAI 26 91 - -
Tan04g2033 616 Gene3D - 27 91 IPR038088 -
Tan04g2033 616 Pfam GRAS domain family 183 542 IPR005202 -
Tan04g2033 616 ProSiteProfiles GRAS family profile. 174 543 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2033 Tan-Chr4:73062542 Tan11g1400 Tan-Chr11:12468463 2.80E-183 dispersed
Tan04g2033 Tan-Chr4:73062542 Tan01g2424 Tan-Chr1:30166427 1.90E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27292 PF03514 GRAS 5.20E-125 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2033 K14494 - csv:101203095 879.396