Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2057 ATGATCTTGTCATGGAGGAAAAACAAACTTGGGTTTCTCCCCAAATTGAAGAAAGAGCTTCCGGGCGTCAATTCGGGTTCGGAAATTGTGATTCCTTCGCATTTTTTGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGCATCGAGAAGTGGATTGAGGGGGGGAATTTTTCTTGTCCTGTCACGAAACAGGATTTGACGAGTTTCGACCTAATCCCTAATCACGCGTTGAGGAAGATGATCCAAGATTGGTGCGTTGCGAATCGTTCTTACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTCACGCCGTATGAAGTTAATGAGGTTTGTTCGAGAATCGCCGTCGCGACTCAAAGGGGCGATTCGAAGAGGTGCGGTGAATTGGTGGCTAAGATCAGGAATTGGGCGAGAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAGCTGGGAATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTTTTTCTATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGATGGTTTTGGTGTGTATGTTCCCAATCGCCATTGAAGGGTTATCTAAGCTTGGATCTGCGGATTCCATGAAATGCTTAGTTTCCTTCTTAATGGGAAAAGATCTTTCTCCCAAACAGAACGCAATTTTTGTTCTGAAAGAACTGCTTTTGGTTGATCAAAGCTATGTCGATTCATTGGCTGCCATTGAAGGAGTATCTGAAGCTTTAGTTAGCATCATAAGGGAGCCTCTTTGTCCCTCAGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCAGAAATCAGCGAGAAAATGGCATTGAAATTTGTGGAACTGGGCTTGGTCTCTCAGCTACTAGATTTTCTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAGTTTTGGATGAAATCTGTGATTTCAAACAAGGAAGAGAGAAGCTTTACCAAAATGCTCTAACTATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGGTAGTCACTGAATATTCTCTGTCAATATTGTTGAAACTTTGTAAGAGTGGAGAGAAGGGTGAGGATGAGGTGAGGATGGAAGCAGCCCAATTGGGTGCTTTCCAGAAGATATTGGTTCTTTTACAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTGTTGCATCTGTACAAGGATAGGTTAGATTGTATTGATTCATCAATGCATTTTAGGTACTTGAAGAAATCATTCTGA 1329 42.81 MILSWRKNKLGFLPKLKKELPGVNSGSEIVIPSHFLCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLTSFDLIPNHALRKMIQDWCVANRSYGIERIPTPRIPVTPYEVNEVCSRIAVATQRGDSKRCGELVAKIRNWARESERNRRCIVNGGAGNVLAASFEHFAGFSIEKHVGLLEEILMVLVCMFPIAIEGLSKLGSADSMKCLVSFLMGKDLSPKQNAIFVLKELLLVDQSYVDSLAAIEGVSEALVSIIREPLCPSATKSSLTAIFYMILPSEISEKMALKFVELGLVSQLLDFLVDAEKSLCEKALGVLDEICDFKQGREKLYQNALTIPLLVKKILRVSEVVTEYSLSILLKLCKSGEKGEDEVRMEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLHLYKDRLDCIDSSMHFRYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74651170 74655541 - Tan0002012.1 Tan04g2057 750461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2057 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g2057 442 SUPERFAMILY ARM repeat 216 403 IPR016024 -
Tan04g2057 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Tan04g2057 442 SUPERFAMILY RING/U-box 28 107 - -
Tan04g2057 442 Gene3D - 123 417 IPR011989 -
Tan04g2057 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 108 IPR013083 -
Tan04g2057 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Tan04g2057 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g2057 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Tan04g2057 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0691 Tan-Chr1:6631457 Tan04g2057 Tan-Chr4:74651170 6.80E-56 dispersed
Tan04g1487 Tan-Chr4:19198297 Tan04g2057 Tan-Chr4:74651170 2.20E-118 dispersed
Tan04g2057 Tan-Chr4:74651170 Tan09g0688 Tan-Chr9:55786617 7.60E-42 dispersed
Tan04g2057 Tan-Chr4:74651170 Tan08g1621 Tan-Chr8:65799506 1.80E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2057 - - - 0.0