Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2073 ATGTGGACCTTATCAAATTGCAGTAAGCCAGTGGAACTCGATCGTCTTTTTGATTGCCTTCCCAACTCTTTGCGTCCATCATCAGCATCTGCGCACCACGGTGATAATGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAAAAGTTGCCATCTTCATTCCCCCAACTCTTATTCCTCTCAGGGTCAAACTGCTGTTTGCTGGGGAAAAGAAAATCTGTGATCAAATATTTGATGGTGTAGACTCTATCCAGGATCAATGCTTTGCAGATGTGACTGCAAACAGTGTGTCAATGCTACTAAGTTTTGGAGAGGCAATTGCAAGAAGCAAGAGATCTCTAGAAAAATTGTTTGTTCTATTAGACATGTTTGAAATAATGCGAGAACTGCAATCTGAGGTTGAAACACTTTTTGGAACTAAAGCACGCATTGAAATGCGGGATTCTGCATTGAGCTTAACACAACGCCTTGCTGAGGCAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGTCGTGGAAAAAGATGCCACAAAAACTGTTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAACTACGTCAAGTTCTTATTTGACTACCAATCTACTTTGAAGCAACTATTCCAAGACTTTGACGCTGGTGATCCAGATGCTCAATTAGCAGTGGTAACTACAAGAATTACGCAAGCCCTTCAGACTAATCTTGATAGAAAATCTAAGCAATATAGGGATCCTGCATTAACTCAATTGTTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCGGAGGCAAAGGATTTGCTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGGTCAAGAAGGAACCTTAG 924 40.8 MWTLSNCSKPVELDRLFDCLPNSLRPSSASAHHGDNGSKNNSDHHNKSLKVAIFIPPTLIPLRVKLLFAGEKKICDQIFDGVDSIQDQCFADVTANSVSMLLSFGEAIARSKRSLEKLFVLLDMFEIMRELQSEVETLFGTKARIEMRDSALSLTQRLAEAAQETFVDFEEVVEKDATKTVVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDAGDPDAQLAVVTTRITQALQTNLDRKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKVKKEP 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74949020 74959145 - Tan0009388.1 Tan04g2073 750477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2073 307 PANTHER EXOCYST COMPLEX PROTEIN EXO70 64 303 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan04g2073 307 Pfam Exo70 exocyst complex subunit C-terminal 64 303 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan04g2073 307 Gene3D Exocyst complex component Exo70 2 306 - -
Tan04g2073 307 SUPERFAMILY Cullin repeat-like 67 303 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0719 Tan-Chr4:6197485 Tan04g2073 Tan-Chr4:74949020 1.70E-106 dispersed
Tan04g2073 Tan-Chr4:74949020 Tan05g2361 Tan-Chr5:74963276 2.10E-43 dispersed
Tan04g2073 Tan-Chr4:74949020 Tan05g2961 Tan-Chr5:81690153 1.60E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2073 K07195 - csv:105436018 437.958