Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g2080 | ATGGAGAACATGATGGGTCTGTTGAAAATCCATGTGTTCAGAGGGCTCAATCTTGCCGTAAGAGACCTTGTGAGCAGTGATCCTTACATTATTTTCAAGATGGGCAATAAGAAGTTGAAGACTCGAGTAGTTGAGCAAAGCACAAATCCAGAGTGGAATCATGATCTAACTTTCGTGATCGAAGATCCAGATCTCCCAGTCAAACTGTTTGTATACGACAAGGACTTGTTCTCATTAGACGACAGAATGGGCGACGCAGAGTTCGACGTTCGCCCATTCATTGAAGTTGTGAAGATGAGACTAAAGAACCTTCCCAATGGAACCATCATAAGAAAGATTCAACCAAGTAGGGAGAATTGCTTGTCTGAAGAAAGTTACATTTTTTGGGCAGATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTGTGGTGAAGTTGAACTGCAGTTGAAATGGGTTGATATTCCTGGTTCTAGGGGATTGTAG | 498 | 41.57 | MENMMGLLKIHVFRGLNLAVRDLVSSDPYIIFKMGNKKLKTRVVEQSTNPEWNHDLTFVIEDPDLPVKLFVYDKDLFSLDDRMGDAEFDVRPFIEVVKMRLKNLPNGTIIRKIQPSRENCLSEESYIFWADGQVIQKMFLRLRNVECGEVELQLKWVDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 75044453 | 75047187 | + | Tan0021311.1 | Tan04g2080 | 750484 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g2080 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Tan04g2080 | 165 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Tan04g2080 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - | |
| Tan04g2080 | 165 | Gene3D | C2 domain | 3 | 160 | IPR035892 | - | |
| Tan04g2080 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Tan04g2080 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - | |
| Tan04g2080 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g2080 | Tan-Chr4:75044453 | Tan04g2082 | Tan-Chr4:75077650 | 1.00E-76 | dispersed | |
| Tan04g2080 | Tan-Chr4:75044453 | Tan04g2081 | Tan-Chr4:75044453 | 1.20E-72 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g2080 | - | - | - | 0.0 |