Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2081 ATGATTTGGATGCTGTGTGAGCAACACTCAAGTTATGCTCTTGTGAGAAAACAAGTGGTTTTTCCAATACATTCATATAAGTTGAAGACTCGAGTAGTTGAGCAAAGCACAAATCCAGAGTGGAATCATGATCTAACTTTCGTGATCGAAGATCCAGATCTCCCAGTCAAACTGTTTGTATACGACAAGGACTTGTTCTCATTAGACGACAGAATGGGCGACGCAGAGTTCGACGTTCGCCCATTCATTGAAGTTGTGAAGATGAGACTAAAGAACCTTCCCAATGGAACCATCATAAGAAAGATTCAACCAAGTAGGGAGAATTGCTTGTCTGAAGAAAGTTACATTTTTTGGGCAGATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTGTGGTGAAGTTGAACTGCAGTTGAAATGGGTTGATATTCCTGGTTCTAGGGGATTGTAG 465 40.43 MIWMLCEQHSSYALVRKQVVFPIHSYKLKTRVVEQSTNPEWNHDLTFVIEDPDLPVKLFVYDKDLFSLDDRMGDAEFDVRPFIEVVKMRLKNLPNGTIIRKIQPSRENCLSEESYIFWADGQVIQKMFLRLRNVECGEVELQLKWVDIPGSRGL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75044453 75047187 + Tan0021311.2 Tan04g2081 750485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2081 154 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 19 152 IPR044562 -
Tan04g2081 154 Pfam C2 domain 22 81 IPR000008 -
Tan04g2081 154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 102 IPR035892 -
Tan04g2081 154 Gene3D C2 domain 10 149 IPR035892 -
Tan04g2081 154 ProSiteProfiles C2 domain profile. 1 95 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2081 Tan-Chr4:75044453 Tan05g2189 Tan-Chr5:72792891 1.20E-47 dispersed
Tan04g2080 Tan-Chr4:75044453 Tan04g2081 Tan-Chr4:75044453 1.20E-72 tandem
Tan04g2081 Tan-Chr4:75044453 Tan04g2082 Tan-Chr4:75077650 1.40E-59 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2081 - - - 0.0