Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2102 ATGGCCACGAAGATCGACGGAATCGAAGAGGAAGAAATTTCAAAGCTCGAAGAAGGCACTCTCGTTTCCAATGTCGCCCGTCTCTGCCCCTCATCTTCGGTCGTCGTCACCATCCAAAAGGTTATCGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTACGGATCGGTGACGTTTCCAGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCTGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACAATCACCTTCGCCCTTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATGTACATAGGAGCTCAACTAGCAGGGTCCCTTCTTGCAAGCTGCACACTGGATCTAATGCTTGAAGTGACCCCCGAAGCCTTCTTTGGGACAGTGCCTGTAGGATCCAATGTCCAATCTCTGGTTCTTGAAATCATCATCACCTTCCTTTTGATGTTTGTCATCTCTGGCGTCTCCACTGATAACAGAGCTGTAGGAGAATTGGCAGGAATTGCTGTTGGAATGACTATTCTGTTGAATGTTTTGGTCGCTGGGCCGATTTCGGGAGCCTCCATGAATCCAGCAAGGAGCATTGGACCCGCGATAGTGAAGCGACAGTTCAAAGGATTATGGGTTTACATCATCGGACCGTTGATCGGAGCCGTCGCCGGAGGATTTGCCTACAACCTAATGAGATTCACAGACAAGCCACTGCGGGAGATCACCAGAAGCAGCTCATTCCTCAGCTGCCGCCAAAAATGA 810 50.12 MATKIDGIEEEEISKLEEGTLVSNVARLCPSSSVVVTIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTITFALFRRFPFWQVPMYIGAQLAGSLLASCTLDLMLEVTPEAFFGTVPVGSNVQSLVLEIIITFLLMFVISGVSTDNRAVGELAGIAVGMTILLNVLVAGPISGASMNPARSIGPAIVKRQFKGLWVYIIGPLIGAVAGGFAYNLMRFTDKPLREITRSSSFLSCRQK 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75968736 75972836 + Tan0012827.1 Tan04g2102 750506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2102 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Tan04g2102 269 NCBIfam MIP family channel protein 43 244 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 Gene3D Glycerol uptake facilitator protein. 7 258 IPR023271 -
Tan04g2102 269 CDD MIP 39 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2102 269 SUPERFAMILY Aquaporin-like 37 257 IPR023271 -
Tan04g2102 269 PANTHER AQUAPORIN NIP2-1 33 252 IPR034294 -
Tan04g2102 269 Pfam Major intrinsic protein 36 244 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2102 Tan-Chr4:75968736 Tan07g1205 Tan-Chr7:47124639 4.30E-56 dispersed
Tan04g2102 Tan-Chr4:75968736 Tan08g1843 Tan-Chr8:70567235 6.30E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2102 K09874 - csv:101215315 463.381