Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2102 | ATGGCCACGAAGATCGACGGAATCGAAGAGGAAGAAATTTCAAAGCTCGAAGAAGGCACTCTCGTTTCCAATGTCGCCCGTCTCTGCCCCTCATCTTCGGTCGTCGTCACCATCCAAAAGGTTATCGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTACGGATCGGTGACGTTTCCAGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCTGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACAATCACCTTCGCCCTTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATGTACATAGGAGCTCAACTAGCAGGGTCCCTTCTTGCAAGCTGCACACTGGATCTAATGCTTGAAGTGACCCCCGAAGCCTTCTTTGGGACAGTGCCTGTAGGATCCAATGTCCAATCTCTGGTTCTTGAAATCATCATCACCTTCCTTTTGATGTTTGTCATCTCTGGCGTCTCCACTGATAACAGAGCTGTAGGAGAATTGGCAGGAATTGCTGTTGGAATGACTATTCTGTTGAATGTTTTGGTCGCTGGGCCGATTTCGGGAGCCTCCATGAATCCAGCAAGGAGCATTGGACCCGCGATAGTGAAGCGACAGTTCAAAGGATTATGGGTTTACATCATCGGACCGTTGATCGGAGCCGTCGCCGGAGGATTTGCCTACAACCTAATGAGATTCACAGACAAGCCACTGCGGGAGATCACCAGAAGCAGCTCATTCCTCAGCTGCCGCCAAAAATGA | 810 | 50.12 | MATKIDGIEEEEISKLEEGTLVSNVARLCPSSSVVVTIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTITFALFRRFPFWQVPMYIGAQLAGSLLASCTLDLMLEVTPEAFFGTVPVGSNVQSLVLEIIITFLLMFVISGVSTDNRAVGELAGIAVGMTILLNVLVAGPISGASMNPARSIGPAIVKRQFKGLWVYIIGPLIGAVAGGFAYNLMRFTDKPLREITRSSSFLSCRQK | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 75968736 | 75972836 | + | Tan0012827.1 | Tan04g2102 | 750506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2102 | 269 | ProSitePatterns | MIP family signature. | 95 | 103 | IPR022357 | - | |
Tan04g2102 | 269 | NCBIfam | MIP family channel protein | 43 | 244 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | Gene3D | Glycerol uptake facilitator protein. | 7 | 258 | IPR023271 | - | |
Tan04g2102 | 269 | CDD | MIP | 39 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 77 | 101 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 159 | 177 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 227 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 114 | 133 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | PRINTS | Major intrinsic protein family signature | 190 | 212 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2102 | 269 | SUPERFAMILY | Aquaporin-like | 37 | 257 | IPR023271 | - | |
Tan04g2102 | 269 | PANTHER | AQUAPORIN NIP2-1 | 33 | 252 | IPR034294 | - | |
Tan04g2102 | 269 | Pfam | Major intrinsic protein | 36 | 244 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2102 | Tan-Chr4:75968736 | Tan07g1205 | Tan-Chr7:47124639 | 4.30E-56 | dispersed | |
Tan04g2102 | Tan-Chr4:75968736 | Tan08g1843 | Tan-Chr8:70567235 | 6.30E-23 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2102 | K09874 | - | csv:101215315 | 463.381 |