Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2148 ATGGATTTTATGATGGAGGGTCGTGGGGGTAATGGCGGTGGGTCAGGTGATGAACAAGAAGCTTCTAATGATCGCAAGGGGAAGAAAACTTATCATCGCCATACTCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGAGTGCCCCCACCCCGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAAACCAAACAGATAAAATTCTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAACGAGCGAGCAGACAACTCTGCGCTTCGGACCGAGAATGAAAAAATTCAATGTGAAAATCTTGCAATTAGAGAAGCCTTGAGGAATGTGATCTGTCCGTCCTGTGGAGGTCCACCTTTCGGAGAAGAAGAACGGCAGCGCAATCTCCAAAAACTCCGTCTTGAAAATGCTCACTTAAAAGAAGAGCATGAAAAGGTATCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCGCTATTGCCTGTTCTTGGATCTTCACTCGATTTGTCACCAAGAAGCTCCCTTAGCCAAATAGTTGCGAGTCCTGCAGTTGATCTTATTTCTGATCCTGTAATATTAAATGGAACGGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTTTGAGGATGGATGAACCTTTGTGGATGAAGACCCTGAATGATGAGAGGTGTATTCTTCATCGTGACAGCTATGACAAAATATTTCCTAGACCCAATCACTTCAAATCTTCTAGCGCTCGTACTGAATCATCGAAAGCTTCAGGAGTGGTGACAATGAGTGCAATGCAATTGGTTGATGTTTTTTTAGATGCGGATAAATGGGCAGATATTTTTCCAACTGTCATTATAAATGCGGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGCGCCTTACAGTTGATGTATGAACAAATGCACATATTTTCGCCCCTTGTGTCGCCTCGGGATTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTGATAGTGGATGTATCGTATGAATTCTTAAAGGATTGTGTTACCTCCGCCCGCTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGGGATCTTGTGTTCAATACTATGGCATATGGAGCTGAACGATGGGTTTTCACTCTCCAAAGGATGTGTGAGAGATTGGCTCACACATTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCTTGAAGGTAGGAGGAGCATCATGAAACTGTCACATAGGATGGTAAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAATTATCTGAAGTGAACAATACTGGTGTTCGAATCTCTGTTCGGATTAGCTCGGAACTGGGGCAGCCCAGTGGGACAGTCGTTAGTGCTGCAACATCTCTTTGGCTTCCTCTACAACCTGAAAGCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTCTCTAATGGAAACCCAGTACATGAAATTGCACATATCTTAACAGGAGTTCATCCAGGAAACTCGATATCAATAATTCGGCCATTTGTCCCGACCGAGAACAATATGCTGATTCTTCAAGAGAGCTGCATAGATCCGCTGGGATCCTTGGTGATATATGCACCCATCGACATGCCTGCTATGAACATTGCAGCAAGCGGTCAGGACCCATCTGAGATACCGATACTTCCTTCGGGGTTCGTAATCACAGGGGACGGCCGTGCTCATTCAGGAGTCGGAGGTTCAACCAGTGGAACCTCGGGAAGGCCAAGCGGGTCTCTGTTAACCGTAGCCTTCCAGATACTGGTGTCCAGTGTATCATCTTCAAAACAGCTGAATGTGGAGTCTGTGGCAACAGTGAATACACTTATCAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2133 45.05 MDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLESFFRECPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSALRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENAHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLSQIVASPAVDLISDPVILNGTATPYQSRGINDLENALMLETAATALEELIRLLRMDEPLWMKTLNDERCILHRDSYDKIFPRPNHFKSSSARTESSKASGVVTMSAMQLVDVFLDADKWADIFPTVIINAETFHIIDPGMPGNRSGALQLMYEQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEFLKDCVTSARCWRLPSGCMIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTMAYGAERWVFTLQRMCERLAHTFRDCAPSHELGGVLTSLEGRRSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNTGVRISVRISSELGQPSGTVVSAATSLWLPLQPESIFNFFRDEKARVQWDVLSNGNPVHEIAHILTGVHPGNSISIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNIAASGQDPSEIPILPSGFVITGDGRAHSGVGGSTSGTSGRPSGSLLTVAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 77396112 77400372 + Tan0022567.1 Tan04g2148 750552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2148 710 SUPERFAMILY Bet v1-like 470 669 - -
Tan04g2148 710 Gene3D - 14 102 - -
Tan04g2148 710 MobiDBLite consensus disorder prediction 1 33 - -
Tan04g2148 710 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Tan04g2148 710 Pfam START domain 227 447 IPR002913 GO:0008289(InterPro)
Tan04g2148 710 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g2148 710 SUPERFAMILY Bet v1-like 218 448 - -
Tan04g2148 710 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
Tan04g2148 710 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Tan04g2148 710 Coils Coil 84 104 - -
Tan04g2148 710 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Tan04g2148 710 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289(InterPro)
Tan04g2148 710 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Tan04g2148 710 SMART START_1 225 447 IPR002913 GO:0008289(InterPro)
Tan04g2148 710 Gene3D - 225 432 IPR023393 -
Tan04g2148 710 CDD START_ArGLABRA2_like 221 446 - -
Tan04g2148 710 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Tan04g2148 710 Coils Coil 127 154 - -
Tan04g2148 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 707 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2148 Tan-Chr4:77396112 Tan05g3373 Tan-Chr5:85543244 3.70E-208 dispersed
Tan04g2148 Tan-Chr4:77396112 Tan02g0328 Tan-Chr2:2703797 1.70E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27299 PF01852 START 5.40E-38 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2148 K09338 - csv:101205899 1289.25