Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2344 ATGGAGACCTTTCTATTTACCTCAGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGACCAGATCTCTGATGCAGTTCTTGATGCTTGCCTTGCTCAAGATCCTGATAGCAAGGTTGCTTGTGAGACCTGCACCAAGACTAACATGGTTATGGTTTTTGGAGAGATTACAACCAAGGCTGACGTGGACTATGAGAAGATCGTCCGAGATACTTGCCGTTCGATCGGATTCATCTCAGACGATGTGGGTCTTGATGCTGACAACTGCAAGGTCCTTGTCAACATTGAACAACAGAGCCCTGATATTGCCCAAGGTGTCCATGGACATTTCACTAAACGACCTGAGGACATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACCGATGAGACCCCAGAACTTATGCCCCTTAGTCACGTCCTTGCAACGAAGCTCGGCGCTCGCCTCACGGAGGTGAGGAAGAATGGTACCTGCCCATGGTTGAGACCCGACGGTAAGACCCAAGTTACTGTGGAGTACTATAATGATAATGGCATGGCGGCCATGGCTCTTTCATCTACCTTCACTGGAAAAGCTGTTCCTTTGAATGCACCAACGGAGCTCGCATCCTCGGTTCGCAGCAACGGGAGAGTCTCAATGAGGAAATCTGGAAAGCCCTCTTCAGGTAGCCCATGGTATGGTCCCGACCGTGTCAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCCGACCCCGAGACCTTTGCTAAGAACCGAGAGCTTGAAGTGATTCACAGTAGATGGGCCATGCTTGGAGCTCTAGGATGTGTGTTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTTTGGCCATTTGGGCATGTCAAGTAGTGCTTATGGGTGCAGTTGAAGGTTACCGTATTGCCGGAGGACCTCTCGGAGAAATTACCGATCCTATCTACCCAGGCGGTAGCTTTGATCCCCTCGGGCTGGCCGATGATCCTGATGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAACGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTCTTCGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACAAACTTTGTACCTGGGAAGTGA 1335 49.89 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFISDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGMAAMALSSTFTGKAVPLNAPTELASSVRSNGRVSMRKSGKPSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 81912241 81926167 - Tan0007901.1 Tan04g2344 750748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2344 444 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478(InterPro)|GO:0006556(InterPro)
Tan04g2344 444 Pfam Chlorophyll A-B binding protein 244 411 IPR022796 -
Tan04g2344 444 FunFam S-adenosylmethionine synthetase 1 11 116 - -
Tan04g2344 444 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Tan04g2344 444 SUPERFAMILY S-adenosylmethionine synthetase 115 182 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Tan04g2344 444 Gene3D Chlorophyll a/b binding protein domain 235 437 - -
Tan04g2344 444 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 184 444 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Tan04g2344 444 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478(InterPro)|GO:0006556(InterPro)
Tan04g2344 444 Gene3D - 11 116 - -
Tan04g2344 444 Gene3D - 117 139 - -
Tan04g2344 444 Gene3D - 4 180 - -
Tan04g2344 444 Pfam S-adenosylmethionine synthetase, central domain 118 179 IPR022629 GO:0004478(InterPro)|GO:0006556(InterPro)
Tan04g2344 444 SUPERFAMILY Chlorophyll a-b binding protein 227 441 - -
Tan04g2344 444 FunFam S-adenosylmethionine synthase 117 139 - -
Tan04g2344 444 FunFam Chlorophyll a-b binding protein, chloroplastic 235 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1114 Tan-Chr3:67266689 Tan04g2344 Tan-Chr4:81912241 7.30E-97 dispersed
Tan04g2344 Tan-Chr4:81912241 Tan05g2609 Tan-Chr5:77376359 7.70E-135 dispersed
Tan01g1601 Tan-Chr1:16260739 Tan04g2344 Tan-Chr4:81912241 2.90E-97 transposed
Tan02g0465 Tan-Chr2:4347962 Tan04g2344 Tan-Chr4:81912241 6.80E-123 transposed
Tan10g1823 Tan-Chr10:56891961 Tan04g2344 Tan-Chr4:81912241 7.90E-56 transposed
Tan04g2344 Tan-Chr4:81912241 Tan06g0670 Tan-Chr6:5060632 1.50E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2344 K08912 - csv:101203342 519.62