Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2345 ATGGAGGCTGGATATGGAGGGGAAGCTTGTCAATTGTACGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGAAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGACCTTTAAATACGGTGGAATCTGATCATTTGAGTAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCTTGAACGGAGGAGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTGTTGAAGATGATAATCTTAATGACGAAGCTCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCGAATCGTGCTGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTATCACAGACGGCATAAAGTGTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCAAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCACGTTCTTCAAGAGTTTGATGAAGGGAAACGGAGTTGTCGTAGGCGATTGGCTGGCCATAATAAGCGCAGAAGAAAAATCAATCCAGATAATGTTGTTAATGGAAATTCTCCACCTGATGAGCAGACTAGCAATTTTTTATCGTTAACTCTGTTGCGAATACTTGCAAGTTTGCACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTCATACGAACCCTTGCCTGTCAATCTAGTTCGCATGGAGGAAAAAACCTATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACAATGGGGCATTACTTGGGAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGACCTTCTAAACAACAAGACACGATACCAATATCTGAGACACCCGTGCAAGCAATTGTTAGGGGAGGAGATACACCAGCTATATCTTCTATAAAACCAAGCACGTCGAACAGCCCTCCCGCTTATTCAGAAATCAGGGACAGTACAATTGGGCAATGCAAAATGATGAACTTTGATTTGAACGATGCTTATGTTGACTCAGACGATGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGCCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTACTGGAGAAGCTCAGAGCCGTACAGATCGCATTATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCTCACAGTCCCACAGAGATAGAGAGCTATATCAAGCCTGGTTGTGTTGTTCTAACTATATACCTACGACAGACTGAGGCTGCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCGGACGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAATTGACACATCCTTGCCTCTTAGAAACAAAAATTACTCCCGAATCACAACTGTAAACCCAGTTGCTGTTTCTATATCTAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTGAGCCGACCTACAACTAGGTTGCTCTGTTCAATTGAAGGGAAATATCTAACTCGGGAACCTTCAGATGAGTCAACAGAAAGTGGTGATAACTTGAAGGCGCAAGATGACAACCAATGTGTTACCTTTTCTTGCTTTATTCCTGTCGTCTATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCAGTTTCTTTCCTTTTATAGTTGCAGAGGAAGATGTTTGTACAGAGATCTGCACACTTCAGAGTGCTTTAGAATTTACTGAAACGTGTTCAAACTCTGGGGAAACTATGGAGCTCGAAGGAAGGAGTAATGCAATGGAGTTTATTCACGAAATTGGTTGGCTATTTCATAGAAATCAGTTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCACTGCTACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGAGATCACCCGTCCTTGAATTTCGCATTGACGGAAATGAGTCTGCTTCACCGAGCAGTGAGAAAAAACAGTAGGTCTCTGGTGGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATACATCAAGTTCTGAAGACAATGCATCCATTGTTGGAGGAACCAGTAGCTTCCTGTTTAGACCCGATGTCATAGGCCCGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCGGCTGGGCATGTCGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAATCTACTCAGCAGCACTGCAGGCTTTGTGTCAGGAAACCGCTCGGTTGTGGAACGTCATCTAGCGCATCTCTGGTTTACCGGCCCGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGCGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3027 44.7 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLNGGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVVEDDNLNDEARTLSLKVGGNGSQIVEREAGNWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSNFLSLTLLRILASLHSNGSNQTTDQDLLSHLIRTLACQSSSHGGKNLSGILHEPQNLLNNGALLGKSDLVSTFLSNGPQVPLRPSKQQDTIPISETPVQAIVRGGDTPAISSIKPSTSNSPPAYSEIRDSTIGQCKMMNFDLNDAYVDSDDERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIKPGCVVLTIYLRQTEAAWDDLCHDLSTSLNRLLDVSDDAFWRTGWVYVRVQHQIAFVYHGQVVIDTSLPLRNKNYSRITTVNPVAVSISKKAIFSVKGINLSRPTTRLLCSIEGKYLTREPSDESTESGDNLKAQDDNQCVTFSCFIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCTEICTLQSALEFTETCSNSGETMELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLLRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHPSLNFALTEMSLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASIVGGTSSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAGHVVLDIPSTLSDGSWNQKQNTDLTSSRFEIGRTELKSTQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 81953985 81962273 - Tan0021472.1 Tan04g2345 750749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2345 1008 MobiDBLite consensus disorder prediction 357 373 - -
Tan04g2345 1008 MobiDBLite consensus disorder prediction 415 450 - -
Tan04g2345 1008 SUPERFAMILY Ankyrin repeat 777 891 IPR036770 -
Tan04g2345 1008 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Tan04g2345 1008 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Tan04g2345 1008 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1006 IPR044817 GO:0003677(InterPro)
Tan04g2345 1008 MobiDBLite consensus disorder prediction 353 373 - -
Tan04g2345 1008 Gene3D - 725 898 IPR036770 -
Tan04g2345 1008 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan04g2345 1008 MobiDBLite consensus disorder prediction 224 244 - -
Tan04g2345 1008 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Tan04g2345 1008 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5184 Tan-Chr1:116837938 Tan04g2345 Tan-Chr4:81953985 1.20E-117 dispersed
Tan01g5185 Tan-Chr1:116837938 Tan04g2345 Tan-Chr4:81953985 3.90E-96 dispersed
Tan03g2491 Tan-Chr3:78340959 Tan04g2345 Tan-Chr4:81953985 8.80E-29 dispersed
Tan04g2345 Tan-Chr4:81953985 Tan10g0936 Tan-Chr10:8109893 1.00E-41 dispersed
Tan04g2345 Tan-Chr4:81953985 Tan04g2346 Tan-Chr4:81953985 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27315 PF03110 SBP 7.40E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2345 - - - 0.0