Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2346 ATGGAGGCTGGATATGGAGGGGAAGCTTGTCAATTGTACGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGAAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGACCTTTAAATACGGTGGAATCTGATCATTTGAGTAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCTTGAACGGAGGAGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTGTTGAAGATGATAATCTTAATGACGAAGCTCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCGAATCGTGCTGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTATCACAGACGGCATAAAGTGTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCAAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCACGTTCTTCAAGAGTTTGATGAAGGGAAACGGAGTTGTCGTAGGCGATTGGCTGGCCATAATAAGCGCAGAAGAAAAATCAATCCAGATAATGTTGTTAATGGAAATTCTCCACCTGATGAGCAGACTAGCAATTTTTTATCGTTAACTCTGTTGCGAATACTTGCAAGTTTGCACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTCATACGAACCCTTGCCTGTCAATCTAGTTCGCATGGAGGAAAAAACCTATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACAATGGGGCATTACTTGGGAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGACCTTCTAAACAACAAGACACGATACCAATATCTGAGACACCCGTGCAAGCAATTGTTAGGGGAGGAGATACACCAGCTATATCTTCTATAAAACCAAGCACGTCGAACAGCCCTCCCGCTTATTCAGAAATCAGGGACAGTACAATTGGGCAATGCAAAATGATGAACTTTGATTTGAACGATGCTTATGTTGACTCAGACGATGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGCCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTACTGGAGAAGCTCAGAGCCGTACAGATCGCATTATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCTCACAGTCCCACAGAGATAGAGAGCTATATCAAGCCTGGTTGTGTTGTTCTAACTATATACCTACGACAGACTGAGGCTGCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCGGACGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAATTGACACATCCTTGCCTCTTAGAAACAAAAATTACTCCCGAATCACAACTGTAAACCCAGTTGCTGTTTCTATATCTAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTGAGCCGACCTACAACTAGGTTGCTCTGTTCAATTGAAGGGAAATATCTAACTCGGGAACCTTCAGATGAGTCAACAGAAAGTGGTGATAACTTGAAGGCGCAAGATGACAACCAATGTGTTACCTTTTCTTGCTTTATTCCTGTCGTCTATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCAGTTTCTTTCCTTTTATAGTTGCAGAGGAAGATGTTTGTACAGAGATCTGCACACTTCAGAGTGCTTTAGAATTTACTGAAACGTGTTCAAACTCTGGGGAAACTATGGAGCTCGAAGGAAGGAGTAATGCAATGGAGTTTATTCACGAAATTGGTTGGCTATTTCATAGAAATCAGTTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCACTGCTACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGAGATCACCCGTCCTTGAATTTCGCATTGACGGAAATGAGTCTGCTTCACCGAGCAGTGAGAAAAAACAGTAGGTCTCTGGTGGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATACATCAAGTTCTGAAGACAATGCATCCATTGTTGGAGGAACCAGTAGCTTCCTGTTTAGACCCGATGTCATAGGCCCGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCGGCTGGGCATGTCGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAATCTACTCAGCAGCACTGCAGGCTTTGTGTCAGGAAACCGCTCGGTTGTGGAACGTCATCTAGCGCATCTCTGGTTTACCGGCCCGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGCGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3027 44.7 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLNGGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVVEDDNLNDEARTLSLKVGGNGSQIVEREAGNWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSNFLSLTLLRILASLHSNGSNQTTDQDLLSHLIRTLACQSSSHGGKNLSGILHEPQNLLNNGALLGKSDLVSTFLSNGPQVPLRPSKQQDTIPISETPVQAIVRGGDTPAISSIKPSTSNSPPAYSEIRDSTIGQCKMMNFDLNDAYVDSDDERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIKPGCVVLTIYLRQTEAAWDDLCHDLSTSLNRLLDVSDDAFWRTGWVYVRVQHQIAFVYHGQVVIDTSLPLRNKNYSRITTVNPVAVSISKKAIFSVKGINLSRPTTRLLCSIEGKYLTREPSDESTESGDNLKAQDDNQCVTFSCFIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCTEICTLQSALEFTETCSNSGETMELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLLRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHPSLNFALTEMSLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASIVGGTSSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAGHVVLDIPSTLSDGSWNQKQNTDLTSSRFEIGRTELKSTQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 81953985 81962273 - Tan0021472.2 Tan04g2346 750750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2346 1008 MobiDBLite consensus disorder prediction 357 373 - -
Tan04g2346 1008 MobiDBLite consensus disorder prediction 415 450 - -
Tan04g2346 1008 SUPERFAMILY Ankyrin repeat 777 891 IPR036770 -
Tan04g2346 1008 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Tan04g2346 1008 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Tan04g2346 1008 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1006 IPR044817 GO:0003677(InterPro)
Tan04g2346 1008 MobiDBLite consensus disorder prediction 353 373 - -
Tan04g2346 1008 Gene3D - 725 898 IPR036770 -
Tan04g2346 1008 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan04g2346 1008 MobiDBLite consensus disorder prediction 224 244 - -
Tan04g2346 1008 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Tan04g2346 1008 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2346 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2346 Tan-Chr4:81953985 Tan10g0936 Tan-Chr10:8109893 1.00E-41 dispersed
Tan04g2345 Tan-Chr4:81953985 Tan04g2346 Tan-Chr4:81953985 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2345 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2346 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2345 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan04g2346 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50570 55.9 7.1e-38 155.6
Tan06g1920 . 90 206 SBP-box Gene Family AT1G02065 66.1 4.1e-37 152.5
Tan04g2345 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2346 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan06g1920 . 90 206 SBP-box Gene Family AT1G02065 66.1 4.1e-37 152.5
Tan04g2345 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan04g2346 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50570 55.9 7.1e-38 155.6
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50670 55.9 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27316 PF03110 SBP 7.40E-30 No_clan Tan TF