Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2363 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGGCGGCGAGCGGTTAACGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTTGATCAGATGGGCATTAAGGACGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCGGCCATTCAGCAGAGAGCCGTGAGGCCGATTATTGAGGGTCGGGATGTTATTGCTCAGGCTCAATCTGGAACTGGGAAGACCTCCATGATTGCCCTTACCGTTTGCCAAATGGTTGATACCTCCAGCAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAAGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATTAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACGTTGCGGACTAGAGCTATTAAGTTGTTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACACTTCCTCATGAAATCCTAGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTGAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCTGTAATTTTCTGTAACACCAAGCGTAAGGTTGAATGGTTGACTGAGAAGATGCGCAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACTCGTGTCCTAATCACTACTGATGTTTGGGCCCGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATCCACAGGATAGGAAGGTCTGGTCGATTTGGGCGTAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCCATGAATGTTGCTGATTTGATTTAA 1233 44.77 MAAAATTSVVPPNRRRAVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 82160085 82165038 - Tan0002279.1 Tan04g2363 750767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2363 410 Gene3D - 27 245 IPR027417 -
Tan04g2363 410 SMART ultradead3 56 253 IPR014001 -
Tan04g2363 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Tan04g2363 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Tan04g2363 410 SMART helicmild6 290 371 IPR001650 -
Tan04g2363 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Tan04g2363 410 Gene3D - 246 410 IPR027417 -
Tan04g2363 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Tan04g2363 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Tan04g2363 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Tan04g2363 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan04g2363 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Tan04g2363 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Tan04g2363 410 CDD SF2_C_DEAD 250 380 - -
Tan04g2363 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2363 Tan-Chr4:82160085 Tan06g0154 Tan-Chr6:1445857 3.90E-141 dispersed
Tan04g2363 Tan-Chr4:82160085 Tan04g2364 Tan-Chr4:82161664 2.90E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2363 K13025 - csv:101222664 801.586