Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2364 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGGCGGCGAGCGGTTAACGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTTGATCAGATGGGCATTAAGGACGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCGGCCATTCAGCAGAGAGCCGTGAGGCCGATTATTGAGGGTCGGGATGTTATTGCTCAGGCTCAATCTGGAACTGGGAAGACCTCCATGATTGCCCTTACCGTTTGCCAAATGGTTGATACCTCCAGCAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAAGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATTAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACGTTGCGGACTAGAGCTATTAAGTTGTTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACACTTCCTCATGAAATCCTAGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTGAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCTGTAATTTTCTGTAACACCAAGCGTAAGGATAATTCCAGAAATCCCCTACTCTCTTGA 894 45.64 MAAAATTSVVPPNRRRAVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKDNSRNPLLS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 82161664 82165038 - Tan0002279.2 Tan04g2364 750768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2364 297 Gene3D - 246 290 IPR027417 -
Tan04g2364 297 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
Tan04g2364 297 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan04g2364 297 Gene3D - 27 245 IPR027417 -
Tan04g2364 297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Tan04g2364 297 SMART ultradead3 56 253 IPR014001 -
Tan04g2364 297 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Tan04g2364 297 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Tan04g2364 297 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 288 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Tan04g2364 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 241 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2364 Tan-Chr4:82161664 Tan06g0154 Tan-Chr6:1445857 1.30E-90 dispersed
Tan04g2363 Tan-Chr4:82160085 Tan04g2364 Tan-Chr4:82161664 2.90E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2364 K13025 - csv:101222664 557.37