Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2386 ATGGGTCGAGGGAAGATTGAAATCAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCCAAGAGACGAGCTGGGTTGCTTAAAAAGGCTCAGGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCGAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGCATAGAATCTTCAGAGGCTGCGGTAGACAGGCACAAGGTCGAGCAAGAGCATGAGGAGGTAGACAATCTAAGAGATGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTACAAAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTAAAAGAGAAGAAGGAACAGTTACTGATGGAGCAATTGGAGCAATCAAGAGTACAGGAACAACGAGCAATGCTAGAAAATGAAACTCTGCGGAGACAGGTCAGCGAGCTTCGATGTCTGTTTCCGCCAGTTGACTGTCCGCTTCCTGCTTATCTTGAATACTGCTCCCTAGAACAGAAAAACATTGGCATTAGAAGCCCTGATATGGCCTGCAATGAAATTGAAAGAGGAGATTCAGACACCACCTTGCATTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGCTGAGAGAGATGCTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA 750 43.6 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCIESSEAAVDRHKVEQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNEIERGDSDTTLHLGLPSHVYCKRKEAERDAHSNDSGSQMGLL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 82651246 82655063 + Tan0002932.1 Tan04g2386 750790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2386 249 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g2386 249 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan04g2386 249 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Tan04g2386 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan04g2386 249 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 Coils Coil 122 142 - -
Tan04g2386 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g2386 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 Coils Coil 85 105 - -
Tan04g2386 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan04g2386 249 Coils Coil 148 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0385 Tan-Chr3:53238086 Tan04g2386 Tan-Chr4:82651246 2.90E-16 dispersed
Tan03g0386 Tan-Chr3:53238086 Tan04g2386 Tan-Chr4:82651246 1.30E-43 dispersed
Tan04g2386 Tan-Chr4:82651246 Tan06g2137 Tan-Chr6:70791271 3.60E-33 dispersed
Tan04g2386 Tan-Chr4:82651246 Tan01g3872 Tan-Chr1:103600486 3.60E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27317 PF01486 K-box 8.20E-18 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2386 - - - 0.0