Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2421 ATGTGCGGTGGTCCAGAAAAATCCAATTCTGCATCTACTACATCAGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGCGGATTCTTTTTATAGTTTAATGGAAGTTGCTTCTGACAATGATGCAGAAGGCTTCAAGCGATTGATTGAGTCTGATTTGTTTTCACTTAATAAGTCTGGACTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGCTCATGAGCATAGAACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTGTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTTTTGTCTGGCACGGACAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGATCTGTGAATGCGGTTGATATTGTTGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATATTAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAACACAATGTTCAGGCTTGAGGAACTTCTCAATAATCATTCGAATGGATCCATGGATGTGTCCTGTTTACATTTGTCAATCAAAACACCTGATTCAGATTCACCACCGCTTTCCTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATGTCTTCTCCCAAATTTACTGATGGGTTTGCAAGCTCCACTAAGGAGAAGAAGGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACAGATGAGTTTCGCATGTTCTCTTTCAAAGTGAGGCCTTGTTCTCGGGCATATTCCCATGACTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACACGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGGACTCGTCTTTGCAAGGATGGTACAAGTTGCAATAGACGGGTTTGTTTCTTTGCTCACACCAATGAAGAGCTAAGGCCATTGTACGTGTCTACTGGATCTGCTGTCCCTTCCCCACGATCGATTGGGTCTGCCCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGTTCCCCTTCGTCAGTGTCAGCTTTATCTCCATCTCCATTTACTCAGTCCATGTCTCCCTCTGCGAATGGTGTTTCTCACTCTTCTATGAACTGGCAGCAGCCAAATGTACCTACTCTTCATCTTCCTGGAAGTAATCTTCAATCTAGCCGGTTGAGGTCATCTCTGAACGCCAGGGACATGCCTCTGGAGGATTTGAATGCCATGCCAGACTTCGAAAACCAGCCACGAATGTTGAACGATATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTGTTTCTGTCAGTCGATCTGGCTGGACCCAAACACTAACTCCTAACAATCTTGAAGAGCTATTTTCCTCCGAGATCTCTTCGTCTCCCCGATTTTCTGATCCAGCCGCCAATGTCTTCTCCCCTACGCGCAAATCAACATTACTAAATCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAACATAATGTCTCCTAAGAATGTTGATCATCCTTTGTTGCAGGCCTCTTTTGGAGTTTCATCGCCAGGAAGGATGTCACCAAGAAGCACCGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCATTTGTACAGCGTGAAAAGCAACAACATCTTCGCACTCTCAGCTCAAGGGAGCTCGGATCCAATGTCCCGAGCTCGTTGATCGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGGAGATCATCTTCTTTCGAGATGGGAAATAACGGGGAGGAACCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGTTGGCAGCGCCCGCTGCAGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2169 45.97 MCGGPEKSNSASTTSASSPNPKDMNHLTVDCADSFYSLMEVASDNDAEGFKRLIESDLFSLNKSGLWYVRQKGSKQVAHEHRTPLMVAATYGCVDVVKLILSYPEVDVNLLSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSKDINGDRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDVSCLHLSIKTPDSDSPPLSSSLEDEFPSPPKSMSSPKFTDGFASSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSANGVSHSSMNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNAMPDFENQPRMLNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTLLNQFQQQQQNMLSPINTNIMSPKNVDHPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAAPAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83011691 83016355 + Tan0014006.1 Tan04g2421 750825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2421 722 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Tan04g2421 722 Gene3D - 33 182 IPR036770 -
Tan04g2421 722 MobiDBLite consensus disorder prediction 199 241 - -
Tan04g2421 722 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 Pfam Ankyrin repeats (3 copies) 38 149 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Tan04g2421 722 MobiDBLite consensus disorder prediction 199 229 - -
Tan04g2421 722 MobiDBLite consensus disorder prediction 1 24 - -
Tan04g2421 722 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Tan04g2421 722 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 SMART ANK_2a 33 63 IPR002110 GO:0005515(InterPro)
Tan04g2421 722 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Tan04g2421 722 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Tan04g2421 722 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Tan04g2421 722 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Tan04g2421 722 SUPERFAMILY Ankyrin repeat 34 159 IPR036770 -
Tan04g2421 722 MobiDBLite consensus disorder prediction 1 25 - -
Tan04g2421 722 MobiDBLite consensus disorder prediction 399 421 - -
Tan04g2421 722 Gene3D - 297 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2421 Tan-Chr4:83011691 Tan08g1420 Tan-Chr8:58019450 2.30E-250 dispersed
Tan04g2421 Tan-Chr4:83011691 Tan09g1181 Tan-Chr9:64142276 2.90E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27318 PF12796 Ank_2 6.70E-12 CL0465 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2421 - - - 0.0