Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2429 ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCCTTCCTCAGCAAGCTTTTGAGATCGGAATCGTCCTGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAATTGAAGAAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAATTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTTTAGACAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTCAAGCTAAATTTTCAGACGTTATAAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGACAGAATTGAAGGAGACATTGCAAAATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGCTACTCTTGATGGCCTCTAG 702 43.02 MALASRLRSTIPFLSKLLRSESSCTPLSRTYAATSGKIEEKVKVPLALFGGSGNYASALYIAAVKANSLDKVESELVNLVEAIKKSPTFAQFTMDLSVPAETRVKAINEISAQAKFSDVIKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEETELKETLQNIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPATLDGL 233
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 83083472 83086518 - Tan0003796.1 Tan04g2429 750833
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2429 233 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Tan04g2429 233 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 PANTHER ATP SYNTHASE DELTA CHAIN 1 226 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Tan04g2429 233 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2429 233 Gene3D - 51 144 IPR026015 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2429 Tan-Chr4:83083472 Tan04g2430 Tan-Chr4:83083472 3.00E-122 tandem
Tan01g3110 Tan-Chr1:83433116 Tan04g2429 Tan-Chr4:83083472 8.50E-31 transposed
Tan10g1756 Tan-Chr10:49857176 Tan04g2429 Tan-Chr4:83083472 4.20E-10 transposed
Tan04g2429 Tan-Chr4:83083472 Tan06g0573 Tan-Chr6:4397549 4.20E-92 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2429 K02137 - rcu:8272168 334.339