Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2430 | ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCCTTCCTCAGCAAGCTTTTGAGATCGGAATCGTCCTGCACTCCGGTACTGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAATTGAAGAAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAATTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTTTAGACAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTCAAGCTAAATTTTCAGACGTTATAAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGACAGAATTGAAGGAGACATTGCAAAATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGCTACTCTTGATGGCCTCTAG | 708 | 43.08 | MALASRLRSTIPFLSKLLRSESSCTPVLLSRTYAATSGKIEEKVKVPLALFGGSGNYASALYIAAVKANSLDKVESELVNLVEAIKKSPTFAQFTMDLSVPAETRVKAINEISAQAKFSDVIKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEETELKETLQNIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPATLDGL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 83083472 | 83086518 | - | Tan0003796.2 | Tan04g2430 | 750834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2430 | 235 | PRINTS | ATP synthase delta subunit signature | 201 | 219 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | PRINTS | ATP synthase delta subunit signature | 123 | 134 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | PRINTS | ATP synthase delta subunit signature | 186 | 201 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | PRINTS | ATP synthase delta subunit signature | 53 | 72 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | PRINTS | ATP synthase delta subunit signature | 134 | 148 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | Pfam | ATP synthase delta (OSCP) subunit | 55 | 224 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | Hamap | ATP synthase subunit delta [atpD]. | 49 | 228 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | NCBIfam | ATP synthase F1 subunit delta | 56 | 225 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 54 | 155 | IPR026015 | - | |
Tan04g2430 | 235 | Gene3D | - | 53 | 146 | IPR026015 | - | |
Tan04g2430 | 235 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 188 | 207 | IPR020781 | GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro) | |
Tan04g2430 | 235 | PANTHER | ATP SYNTHASE DELTA CHAIN | 1 | 228 | IPR000711 | GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3110 | Tan-Chr1:83433116 | Tan04g2430 | Tan-Chr4:83083472 | 8.50E-31 | dispersed | |
Tan04g2430 | Tan-Chr4:83083472 | Tan06g0573 | Tan-Chr6:4397549 | 1.50E-92 | dispersed | |
Tan04g2429 | Tan-Chr4:83083472 | Tan04g2430 | Tan-Chr4:83083472 | 3.00E-122 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2430 | K02137 | - | rcu:8272168 | 334.339 |