Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2430 ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCCTTCCTCAGCAAGCTTTTGAGATCGGAATCGTCCTGCACTCCGGTACTGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAATTGAAGAAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAATTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTTTAGACAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTCAAGCTAAATTTTCAGACGTTATAAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGACAGAATTGAAGGAGACATTGCAAAATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGCTACTCTTGATGGCCTCTAG 708 43.08 MALASRLRSTIPFLSKLLRSESSCTPVLLSRTYAATSGKIEEKVKVPLALFGGSGNYASALYIAAVKANSLDKVESELVNLVEAIKKSPTFAQFTMDLSVPAETRVKAINEISAQAKFSDVIKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEETELKETLQNIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPATLDGL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83083472 83086518 - Tan0003796.2 Tan04g2430 750834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2430 235 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 NCBIfam ATP synthase F1 subunit delta 56 225 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
Tan04g2430 235 Gene3D - 53 146 IPR026015 -
Tan04g2430 235 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Tan04g2430 235 PANTHER ATP SYNTHASE DELTA CHAIN 1 228 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3110 Tan-Chr1:83433116 Tan04g2430 Tan-Chr4:83083472 8.50E-31 dispersed
Tan04g2430 Tan-Chr4:83083472 Tan06g0573 Tan-Chr6:4397549 1.50E-92 dispersed
Tan04g2429 Tan-Chr4:83083472 Tan04g2430 Tan-Chr4:83083472 3.00E-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2430 K02137 - rcu:8272168 334.339