Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2471 ATGGAGTTGGGTTTGAGATTGGGAAATGGTCCTCATTCATTTGGGTTTCATCAGAAGCCTCCAGACCCAAATATTGTCTCTCACAGAAGCCTTGATTTTTGCCTTGGTTTTTCTTCTCTTCAACAAGATGATGATCCACAAATCCGTTTCTTTAATCCTCCGCCGCCGTCGTCGCCGTCGCCTCCGCCGGTTCTTCAGCTCGATCTTCTTCCTCGTACTCCTGTCGCCGCCTCTCGCCGATCTTCTCAAACTACTGATGTTTCAGAAGGAGCAGTAGCCGCTGGTTTTACAGATGGGGCTTCCGCGACGGCGGCGGAGGGCGGCGGAGGGGCGGCGGGTGGCGGCGGAGTAATTGAAATGGAAGAGGGAAATGATTATTATTATTATTATTATCGTGAAAGAGGAAGCGATGAAGAAGATCAGAATTTGGGTTCGAAAAAAAAACTGCGGCTTTCGAGAGAACAATCGGCGTTTCTTGAAGAGAGTTTCAAAGAACATCATACGCTTTACCCTAAACAGAAGCTAGAACTTGCAAGAAGATTAAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTTCAAAACAGACGAGCAAGAACAAAGCTGAAGCAAACGGAAGTTGACTGTGAATACTTGAAGAAATGCTGTGAAACATTAACACAAGAAAACAGGAAGCTTCAAAAGGAGCTTCAAGATTTAAGAGCTTTGAAAGCCACTGATTATTCTCTCTTCATGCATTCGCCTGCCACCACTCTCACCATGTGCGCGTCTTGTGAACGCGCCGCCGCCGAGCCATTTTCACGAACTCATCATCTCTCTACACAGAATAAGTAG 831 46.57 MELGLRLGNGPHSFGFHQKPPDPNIVSHRSLDFCLGFSSLQQDDDPQIRFFNPPPPSSPSPPPVLQLDLLPRTPVAASRRSSQTTDVSEGAVAAGFTDGASATAAEGGGGAAGGGGVIEMEEGNDYYYYYYRERGSDEEDQNLGSKKKLRLSREQSAFLEESFKEHHTLYPKQKLELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQENRKLQKELQDLRALKATDYSLFMHSPATTLTMCASCERAAAEPFSRTHHLSTQNK 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83485416 83489410 - Tan0013365.1 Tan04g2471 750875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2471 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 263 IPR050762 -
Tan04g2471 276 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
Tan04g2471 276 MobiDBLite consensus disorder prediction 49 67 - -
Tan04g2471 276 SMART halz 202 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2471 276 CDD homeodomain 146 203 IPR001356 GO:0003677(InterPro)
Tan04g2471 276 MobiDBLite consensus disorder prediction 44 67 - -
Tan04g2471 276 SMART HOX_1 144 206 IPR001356 GO:0003677(InterPro)
Tan04g2471 276 Coils Coil 208 238 - -
Tan04g2471 276 Gene3D - 150 200 - -
Tan04g2471 276 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677(InterPro)
Tan04g2471 276 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g2471 276 Pfam Homeodomain 146 200 IPR001356 GO:0003677(InterPro)
Tan04g2471 276 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2471 Tan-Chr4:83485416 Tan10g0059 Tan-Chr10:933680 5.10E-44 dispersed
Tan04g2471 Tan-Chr4:83485416 Tan06g0528 Tan-Chr6:4040918 7.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27320 PF00046 Homeodomain 4.80E-15 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2471 K09338 - csv:101221600 224.942