Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2483 ATGGCAGTTGAAACTCTTCAGAACGACTTCATTTTCCGGTCGAAATTGCCGGACATTTACATCCCCAAGCACCTTCCTCTGCACTCGTATTGCCTTCACGAAAATACGTCGAAGATCGGCGACCGAACCTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACGCCGACGTCGATCTCGCCGCTCGCAAGGTCGCCTCCGGATTGAACAAACTCGGCATTGCAAAAGGCGATGTGATCATGCTCCTCCTCCCGAACTCGCCGGATTTCGTCTTCGCATTCCTCGGCGCGTCGTACCGCGGCGCGATTATGACGGCGGCGAATCCTTTCTTCACGGCGGCGGAGATCGCGAAGCAAGCGAAAGGATCGAAGACGAAATTGATAATCACACAGTCGTCGTATTACGAGAAAGTGAAGGATATAACAGAGGAATTACCTGATGCTAAAATCATGACCGTCGATTCTCCGCCGGACGGTTGTTTATCGTTCGCTGATCTAATCCAAGCCGACGATCGGGAGATTCCGGCGGTGGAGATCAGTCCGGACGACGTCGTTGCGTTGCCGTACTCCTCTGGAACGACCGGATTGCCGAAAGGAGTGATGCTAACGCATAAAGGATTAGTGACGAGTGTGGCTCAGCAAGTCGACGGCGAAAATCCGAATCTGTATTATCGAAACGACGATGTGATTCTGTGCGTTTTGCCGCTTTTCCATATCTATTCGCTTAATTCAGTTCTGCTCTGCGGATTGCGCGCCGGAGCGACGATTCTGATAATACCTAAATTCGAGATCGGTTCGCTTTTGCAATTGGTGGAGAAATACAGAGTTTCGATTGCGCCGATTGTGCCGCCGATTGTTCTCGCCATTGCGAAGTCGCCGGACCTGGAAAAGTACGATCTGTCGTCGATCAGAGTGATTAAATCCGGTGGAGCTCCGCTCGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCCAAGGCTGTGCTCGGCCAGGGATACGGAATGACAGAGGCCGGTCCGGTACTAACAATGGGTTTAGCATTTGCGAAGGAGCCATTTCCGATGAAACCAGGCGCCTGCGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAAACGGCGGCTCCTTGCCCCGAAACACGCCGGGAGAGATCTGCATCCGAGGCGATCAAATCATGAAAGGCTATTTGAACAATCCGGAGGCGACGGCCGCCACGATCGACACCGACGGCTGGTTGCACACCGGCGACATCGGCTTCATCGACGACGACGACGAGCTCTTCATCGTCGATCGGTTGAAGGAGCTGATCAAGTACAAGGGATTCCAAGTCGCGCCGGCGGAACTCGAAGCTCTGTTGCTCACTCATCCGGTCATCTCCGATGCCGCCGTGGTTCCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTTGTGGCGAAATTGAAGAATTCTGAAGTTACAGAGGATGAAATTAAACAATTTATATCAAAACAGGTGGTTTTCTACAAGAGAATCAACCGGGTATTTTTTATAGACGCAATTCCGAAATCGCCCTCGGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGATTTTCCAAATTCTAATTAA 1641 51.92 MAVETLQNDFIFRSKLPDIYIPKHLPLHSYCLHENTSKIGDRTCLINGVTGESFTYADVDLAARKVASGLNKLGIAKGDVIMLLLPNSPDFVFAFLGASYRGAIMTAANPFFTAAEIAKQAKGSKTKLIITQSSYYEKVKDITEELPDAKIMTVDSPPDGCLSFADLIQADDREIPAVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYRNDDVILCVLPLFHIYSLNSVLLCGLRAGATILIIPKFEIGSLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTENGGSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDTDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVAKLKNSEVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAADFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83652448 83657744 - Tan0019885.1 Tan04g2483 750887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2483 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 535 - GO:0016405(PANTHER)
Tan04g2483 546 CDD 4CL 21 534 - -
Tan04g2483 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Tan04g2483 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Tan04g2483 546 Pfam AMP-binding enzyme 35 402 IPR000873 -
Tan04g2483 546 Gene3D - 5 438 IPR042099 -
Tan04g2483 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Tan04g2483 546 SUPERFAMILY Acetyl-CoA synthetase-like 18 540 - -
Tan04g2483 546 Gene3D - 439 541 IPR045851 -
Tan04g2483 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0036 Tan-Chr4:356144 Tan04g2483 Tan-Chr4:83652448 2.00E-116 dispersed
Tan04g2483 Tan-Chr4:83652448 Tan06g0499 Tan-Chr6:3824167 6.80E-234 dispersed
Tan01g2666 Tan-Chr1:43676320 Tan04g2483 Tan-Chr4:83652448 1.00E-112 transposed
Tan03g2786 Tan-Chr3:80859236 Tan04g2483 Tan-Chr4:83652448 6.00E-27 transposed
Tan05g2932 Tan-Chr5:81528263 Tan04g2483 Tan-Chr4:83652448 2.50E-89 transposed
Tan07g2039 Tan-Chr7:71948170 Tan04g2483 Tan-Chr4:83652448 4.20E-93 transposed
Tan11g1527 Tan-Chr11:14037287 Tan04g2483 Tan-Chr4:83652448 7.10E-32 transposed
Tan04g2483 Tan-Chr4:83652448 Tan06g0497 Tan-Chr6:3798153 1.80E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2483 K01904 - csv:101215427 976.852