Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2490 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTTTTATATTCTGTATGAGGAGGTTGGGCAAGGAGTGAGTGCTTCTGTTCGCCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCGAATGTTCTTAAATCACACTGCTCCTTTGTCCATGGCCATAATTTGTGGATTGTTATGCCCTACATGGCTGGAGGTTCTTGTCTTCACATATTGAAGGCTGCATTTCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGTATTGAAGGGGGTTAACTATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATATTCTTATTGATTCACGCGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGACAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTACGACTTCAGGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCTCCTCCTGGCCTTGATTATGAGAGGGATAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTCCTGCAAGTAAGCTGCTAAAGCATTCGTTTTTTAAGCAAGCCCGATCAAATGATTATATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCACAGAATGAATATAAACGAGGAATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAGATGAAACCTGTGAAGTAGGGAGCTCAAATTCCTTATGTACTCTTGATGTGCAAGAAAAGAAATTACAATGCCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGCTGCGGAGACCACCCTCCATGAAAGCTATTGATACATTAGATGGTAAAGGATCTGCCAATGACTCAACAATTATTGGTTCTTGCTCTCAACAACATTCTTCACCTCGCCATGATAATCAAACCGAGAATGGTACAAGTGAAGAGCTTCATTTGGAGAACAGCAAAAGAATATTGGGGAGTACTCCTAATACTAGCCAACATAAAAGAAGTATTTCTTCTAACAGCTCTATTCAACAAGAAGGCAGTTCACCACTGAACAGAAGAGAGAGTAATGAGGCAGAAAAGAATGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAGGCGGTAGATGATGTGCTTTCTGAATCTCACTCTAAAGATCCCAAGTCAACATCAAGTCCAGCAACAAATGACGAGGAACAGGACGAGAAAGCGAAGGTACCAGTCATTCAGCAGAAAGGACGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAGTTGCACCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACACCTCTACTGACACCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGGCTCTAATGAGGCAAATCTCAGTCGGAGATTTTCCAGCCGAGGGTGTGGCTGATGTCTCAGCGGCACATATAACGGCAACGGAGAAATCTTTGCTTGAAGCAGCGCATGAAAGGGAAAAGGAGTTACTCAACGAAGTAACTGAGTTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATTAAACAATGCAGGTTAA 2094 41.45 MEKKTYPIGEDFYILYEEVGQGVSASVRRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVHGHNLWIVMPYMAGGSCLHILKAAFPDGFEEVVIATILREVLKGVNYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFRADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPPASKLLKHSFFKQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESIDETCEVGSSNSLCTLDVQEKKLQCQNSSELSDTEENGMLRRPPSMKAIDTLDGKGSANDSTIIGSCSQQHSSPRHDNQTENGTSEELHLENSKRILGSTPNTSQHKRSISSNSSIQQEGSSPLNRRESNEAEKNVANGSVAIGITSQAVDDVLSESHSKDPKSTSSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVEKAVAPPILQKSHSMQVITSNSATPLPSNLPTPLLTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILALMRQISVGDFPAEGVADVSAAHITATEKSLLEAAHEREKELLNEVTELQWRILRARDEIQRLRLNNAG 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83740111 83749964 + Tan0020810.1 Tan04g2490 750894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2490 697 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Tan04g2490 697 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Tan04g2490 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 696 IPR047173 GO:0043539(InterPro)
Tan04g2490 697 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 MobiDBLite consensus disorder prediction 378 538 - -
Tan04g2490 697 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Tan04g2490 697 Coils Coil 660 694 - -
Tan04g2490 697 CDD STKc_OSR1_SPAK 13 274 - -
Tan04g2490 697 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Tan04g2490 697 MobiDBLite consensus disorder prediction 488 507 - -
Tan04g2490 697 MobiDBLite consensus disorder prediction 449 479 - -
Tan04g2490 697 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Tan04g2490 697 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Tan04g2490 697 MobiDBLite consensus disorder prediction 409 433 - -
Tan04g2490 697 MobiDBLite consensus disorder prediction 524 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2490 Tan-Chr4:83740111 Tan07g1361 Tan-Chr7:63711653 4.50E-150 dispersed
Tan04g2490 Tan-Chr4:83740111 Tan11g0629 Tan-Chr11:5528399 3.60E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67495 PF00069 Pkinase 2.70E-57 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2490 K08835 - csv:101211076 1179.08