Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2490 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTTTTATATTCTGTATGAGGAGGTTGGGCAAGGAGTGAGTGCTTCTGTTCGCCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCGAATGTTCTTAAATCACACTGCTCCTTTGTCCATGGCCATAATTTGTGGATTGTTATGCCCTACATGGCTGGAGGTTCTTGTCTTCACATATTGAAGGCTGCATTTCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGTATTGAAGGGGGTTAACTATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATATTCTTATTGATTCACGCGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGACAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTACGACTTCAGGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCTCCTCCTGGCCTTGATTATGAGAGGGATAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTCCTGCAAGTAAGCTGCTAAAGCATTCGTTTTTTAAGCAAGCCCGATCAAATGATTATATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCACAGAATGAATATAAACGAGGAATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAGATGAAACCTGTGAAGTAGGGAGCTCAAATTCCTTATGTACTCTTGATGTGCAAGAAAAGAAATTACAATGCCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGCTGCGGAGACCACCCTCCATGAAAGCTATTGATACATTAGATGGTAAAGGATCTGCCAATGACTCAACAATTATTGGTTCTTGCTCTCAACAACATTCTTCACCTCGCCATGATAATCAAACCGAGAATGGTACAAGTGAAGAGCTTCATTTGGAGAACAGCAAAAGAATATTGGGGAGTACTCCTAATACTAGCCAACATAAAAGAAGTATTTCTTCTAACAGCTCTATTCAACAAGAAGGCAGTTCACCACTGAACAGAAGAGAGAGTAATGAGGCAGAAAAGAATGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAGGCGGTAGATGATGTGCTTTCTGAATCTCACTCTAAAGATCCCAAGTCAACATCAAGTCCAGCAACAAATGACGAGGAACAGGACGAGAAAGCGAAGGTACCAGTCATTCAGCAGAAAGGACGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAGTTGCACCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACACCTCTACTGACACCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGGCTCTAATGAGGCAAATCTCAGTCGGAGATTTTCCAGCCGAGGGTGTGGCTGATGTCTCAGCGGCACATATAACGGCAACGGAGAAATCTTTGCTTGAAGCAGCGCATGAAAGGGAAAAGGAGTTACTCAACGAAGTAACTGAGTTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATTAAACAATGCAGGTTAA 2094 41.45 MEKKTYPIGEDFYILYEEVGQGVSASVRRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVHGHNLWIVMPYMAGGSCLHILKAAFPDGFEEVVIATILREVLKGVNYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFRADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPPASKLLKHSFFKQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESIDETCEVGSSNSLCTLDVQEKKLQCQNSSELSDTEENGMLRRPPSMKAIDTLDGKGSANDSTIIGSCSQQHSSPRHDNQTENGTSEELHLENSKRILGSTPNTSQHKRSISSNSSIQQEGSSPLNRRESNEAEKNVANGSVAIGITSQAVDDVLSESHSKDPKSTSSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVEKAVAPPILQKSHSMQVITSNSATPLPSNLPTPLLTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILALMRQISVGDFPAEGVADVSAAHITATEKSLLEAAHEREKELLNEVTELQWRILRARDEIQRLRLNNAG 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83740111 83749964 + Tan0020810.1 Tan04g2490 750894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2490 697 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Tan04g2490 697 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Tan04g2490 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 696 IPR047173 GO:0043539(InterPro)
Tan04g2490 697 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2490 697 MobiDBLite consensus disorder prediction 378 538 - -
Tan04g2490 697 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Tan04g2490 697 Coils Coil 660 694 - -
Tan04g2490 697 CDD STKc_OSR1_SPAK 13 274 - -
Tan04g2490 697 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Tan04g2490 697 MobiDBLite consensus disorder prediction 488 507 - -
Tan04g2490 697 MobiDBLite consensus disorder prediction 449 479 - -
Tan04g2490 697 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Tan04g2490 697 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Tan04g2490 697 MobiDBLite consensus disorder prediction 409 433 - -
Tan04g2490 697 MobiDBLite consensus disorder prediction 524 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2490 K08835 - - csv:101211076 1179.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2490 Tan-Chr4:83740111 Tan07g1361 Tan-Chr7:63711653 4.50E-150 dispersed
Tan04g2490 Tan-Chr4:83740111 Tan11g0629 Tan-Chr11:5528399 3.60E-155 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4377 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.3e-225 778.9
Tan04g0983 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0984 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0985 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0986 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan01g4377 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.1 1.4e-231 800.0
Tan04g0983 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0984 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0985 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0986 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0983 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0984 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0985 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0986 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan01g4377 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.3e-67 253.8
Tan11g0629 . 1 663 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.4e-249 859.8
Tan07g1361 . 6 622 MAP Kinase Kinase Kinase Kinase AT5G14720 55.9 3.1e-188 656.0
Tan11g0630 . 15 536 MAP Kinase Kinase Kinase Kinase AT5G14720 61.8 1.2e-174 610.9
Tan01g2286 . 7 705 MAP Kinase Kinase Kinase Kinase AT4G24100 65.9 3.2e-247 852.0
Tan01g2287 . 7 725 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 7.1e-247 850.9
Tan07g1361 . 6 354 MAP Kinase Kinase Kinase Kinase AT4G24100 64.2 9.9e-132 468.4
Tan01g2286 . 11 706 MAP Kinase Kinase Kinase Kinase AT4G10730 66.2 6.1e-248 854.4
Tan01g2287 . 11 726 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 9.8e-246 847.0
Tan07g1361 . 7 375 MAP Kinase Kinase Kinase Kinase AT4G10730 62.9 3.5e-134 476.5
Tan07g1361 . 7 351 MAP Kinase Kinase Kinase Kinase AT1G70430 69.3 9.0e-139 491.5
Tan04g2490 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 50.7 1.0e-129 461.5
Tan01g2286 . 5 398 MAP Kinase Kinase Kinase Kinase AT1G70430 55.2 1.4e-118 424.5
Tan01g2287 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.6 3.0e-118 423.3
Tan04g2490 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 59.8 5.7e-219 758.1
Tan07g1361 . 6 353 MAP Kinase Kinase Kinase Kinase AT1G79640 69.0 5.8e-147 518.8
Tan11g0629 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.5e-104 375.9
Tan07g1361 . 5 327 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 2.8e-98 356.7
Tan04g2490 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 6.1e-85 312.4
Tan01g2286 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 7.4e-75 278.9
Tan01g2287 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 7.4e-75 278.9
Tan11g0630 . 15 201 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 2.0e-51 201.1
Tan10g0722 . 32 507 MAP Kinase Kinase Kinase Kinase AT4G14480 57.6 3.9e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67495 PF00069 Pkinase 2.70E-57 CL0016 Tan PK