Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2493 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCAGCATCTGCTATAAATGTTAGGGAGGCTATTAACAATCGACCATCAGCCTCTGGAAGGGTGCCTTTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCAGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACTATGATGCGGCGTTGTGATCTACCTGCGCGTGATTTGCGCTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTCGGCAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGAAGAAGTCTTGCTGTTAAATTCCCTTGATAGTTATGTATTACAGTATGTGGTAGAGCTACAAAGGCGATTGAAAGCCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCTGACTTAAATAGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCAGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTAGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCATCTATCTCTGCTCCTGTTTCTCCTGTATCTTCACCGCCAGAAACTCGCAAGCTTGAGAAGAGCTTGAGCATTGCAAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAACTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACACTGAACAAGTTGACATCGTTGAAGGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTTCTCACAACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGAAGCATTCAAATGGGTCCTTGTAATTACAGGGGTAAGTGGAATAATTATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1344 42.11 MADLKERLLPPKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKATGVDEVWQNDGNHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPEAFKWVLVITGVSGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83806570 83810836 + Tan0011003.1 Tan04g2493 750897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2493 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Tan04g2493 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Tan04g2493 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Tan04g2493 447 Pfam Magnesium transporter MRS2-like 57 270 - -
Tan04g2493 447 Coils Coil 228 255 - -
Tan04g2493 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Tan04g2493 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Tan04g2493 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Tan04g2493 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Tan04g2493 447 Gene3D - 41 124 - -
Tan04g2493 447 Pfam CorA-like Mg2+ transporter protein 339 435 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2493 K16075 - - csv:101217419 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1037 Tan-Chr2:15647461 Tan04g2493 Tan-Chr4:83806570 1.10E-89 dispersed
Tan02g2277 Tan-Chr2:91660717 Tan04g2493 Tan-Chr4:83806570 1.20E-107 dispersed
Tan02g2278 Tan-Chr2:91660717 Tan04g2493 Tan-Chr4:83806570 7.00E-81 dispersed
Tan04g2493 Tan-Chr4:83806570 Tan07g2269 Tan-Chr7:74051858 9.60E-85 dispersed
Tan04g2493 Tan-Chr4:83806570 Tan06g2463 Tan-Chr6:77240801 6.40E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2493 . 1 447 MRS2 Gene Family AT1G16010 84.1 4.1e-205 711.4
Tan02g2275 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G16010 54.5 7.5e-82 302.0
Tan07g2270 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan07g2271 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan06g2463 . 1 364 MRS2 Gene Family AT5G64560 80.2 1.8e-156 549.7
Tan07g2269 . 1 367 MRS2 Gene Family AT5G64560 70.3 1.2e-133 473.8
Tan07g2271 . 1 327 MRS2 Gene Family AT5G64560 69.8 7.5e-115 411.4
Tan07g2270 . 1 326 MRS2 Gene Family AT5G64560 70.0 9.8e-115 411.0
Tan02g1037 . 14 495 MRS2 Gene Family AT3G19640 64.0 1.6e-154 543.5
Tan01g0792 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan01g0793 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan02g2275 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2276 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2277 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan04g2493 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.7e-112 403.7
Tan02g2278 . 6 285 MRS2 Gene Family AT2G03620 67.7 7.9e-97 351.7
Tan01g0792 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan01g0793 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan06g2463 . 1 326 MRS2 Gene Family AT5G09690 74.8 2.3e-125 446.0
Tan07g2269 . 1 329 MRS2 Gene Family AT5G09690 66.3 1.1e-111 400.6
Tan07g2270 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan07g2271 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan04g2493 . 40 383 MRS2 Gene Family AT5G09690 50.9 9.6e-79 291.2
Tan06g2463 . 23 286 MRS2 Gene Family AT5G09720 67.5 7.2e-89 324.7
Tan07g2269 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2270 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2271 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan04g2493 . 1 447 MRS2 Gene Family AT1G80900 82.8 6.8e-200 694.1
Tan02g2275 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G80900 54.5 1.3e-78 291.2
Tan07g2270 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan07g2271 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan08g1157 . 18 439 MRS2 Gene Family AT5G22830 66.7 2.2e-148 523.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42