Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2493 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCAGCATCTGCTATAAATGTTAGGGAGGCTATTAACAATCGACCATCAGCCTCTGGAAGGGTGCCTTTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCAGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACTATGATGCGGCGTTGTGATCTACCTGCGCGTGATTTGCGCTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTCGGCAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGAAGAAGTCTTGCTGTTAAATTCCCTTGATAGTTATGTATTACAGTATGTGGTAGAGCTACAAAGGCGATTGAAAGCCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCTGACTTAAATAGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCAGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTAGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCATCTATCTCTGCTCCTGTTTCTCCTGTATCTTCACCGCCAGAAACTCGCAAGCTTGAGAAGAGCTTGAGCATTGCAAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAACTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACACTGAACAAGTTGACATCGTTGAAGGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTTCTCACAACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGAAGCATTCAAATGGGTCCTTGTAATTACAGGGGTAAGTGGAATAATTATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1344 42.11 MADLKERLLPPKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKATGVDEVWQNDGNHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPEAFKWVLVITGVSGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83806570 83810836 + Tan0011003.1 Tan04g2493 750897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2493 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Tan04g2493 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Tan04g2493 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Tan04g2493 447 Pfam Magnesium transporter MRS2-like 57 270 - -
Tan04g2493 447 Coils Coil 228 255 - -
Tan04g2493 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Tan04g2493 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Tan04g2493 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Tan04g2493 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Tan04g2493 447 Gene3D - 41 124 - -
Tan04g2493 447 Pfam CorA-like Mg2+ transporter protein 339 435 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1037 Tan-Chr2:15647461 Tan04g2493 Tan-Chr4:83806570 1.10E-89 dispersed
Tan02g2277 Tan-Chr2:91660717 Tan04g2493 Tan-Chr4:83806570 1.20E-107 dispersed
Tan02g2278 Tan-Chr2:91660717 Tan04g2493 Tan-Chr4:83806570 7.00E-81 dispersed
Tan04g2493 Tan-Chr4:83806570 Tan07g2269 Tan-Chr7:74051858 9.60E-85 dispersed
Tan04g2493 Tan-Chr4:83806570 Tan06g2463 Tan-Chr6:77240801 6.40E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2493 K16075 - csv:101217419 819.69