Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2505 ATGGAGGAATTGAAGAGAGTGAGTGCAGAGAACAAGAAATTGACTGAAATGTTGACTGTTGTGTGTGAAAATTACAACATTTTGAAAGGTCATTTGATGGAACAAATGAACAAAAATGGAGAAAAGGAAATTTCTTCTTCAAAGAAGAGGAAATCTGAGAGTAGCAACAATAATAATATGGTTGGAATTAATGGTAATTCTGAGAGTAGTTCAACTGATGAAGAGTCTTACAAGAAGCCAAAAGAGGAAACCATTAACAAAGCTGCTAAAACCACTAGAGTTCAAGTCAAAATTGGAGCTTCTGAATCAAATTTGGTTGTTAAAGATGGATATCAATGGAGGAAATATGGCCAAAAGGTCACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGTAGAAGATCAATCAATTCTGGAAGCCACATACGAAGGCGAACATAACCATCCTCACCCATCTCAAATGGAGGCCACCTCCGGCACCGCTGCCACCCGCTGCGTTAGCCTAACTCCGGCGGCACTCACGGCGGCGCGGGGCTCCTCGTCGGCGCCGGCACTTCCCCTTGACCTGGCAAAGCCCAAATCAAGCACCGAAGCTAAAACCACCTCCAACCCAAGATTCGACTCGCCGGAACTGCAACAATTTCTCGTCGAACAGATGGCCTCTTCATTAACGAAAGACCCCAATTTCACGGCGGCGCTCGCGGCGGCGATTTCGGGAAAAATTTTCCCACATTAG 786 44.78 MEELKRVSAENKKLTEMLTVVCENYNILKGHLMEQMNKNGEKEISSSKKRKSESSNNNNMVGINGNSESSSTDEESYKKPKEETINKAAKTTRVQVKIGASESNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSILEATYEGEHNHPHPSQMEATSGTAATRCVSLTPAALTAARGSSSAPALPLDLAKPKSSTEAKTTSNPRFDSPELQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83951777 83954201 - Tan0010852.3 Tan04g2505 750909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2505 261 MobiDBLite consensus disorder prediction 194 226 - -
Tan04g2505 261 SUPERFAMILY WRKY DNA-binding domain 105 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2505 261 Gene3D WRKY domain 90 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2505 261 MobiDBLite consensus disorder prediction 211 226 - -
Tan04g2505 261 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 255 IPR044810 GO:0003700(InterPro)
Tan04g2505 261 MobiDBLite consensus disorder prediction 36 86 - -
Tan04g2505 261 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2505 261 SMART WRKY_cls 107 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2505 261 MobiDBLite consensus disorder prediction 51 71 - -
Tan04g2505 261 MobiDBLite consensus disorder prediction 36 50 - -
Tan04g2505 261 MobiDBLite consensus disorder prediction 72 86 - -
Tan04g2505 261 FunFam WRKY transcription factor 40 92 169 - -
Tan04g2505 261 Pfam WRKY DNA -binding domain 108 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3569 Tan-Chr1:100673442 Tan04g2505 Tan-Chr4:83951777 1.50E-39 dispersed
Tan04g2503 Tan-Chr4:83951777 Tan04g2505 Tan-Chr4:83951777 1.20E-123 dispersed
Tan04g2505 Tan-Chr4:83951777 Tan09g2157 Tan-Chr9:71677977 1.40E-22 dispersed
Tan04g2504 Tan-Chr4:83951777 Tan04g2505 Tan-Chr4:83951777 7.80E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27324 PF03106 WRKY 1.20E-23 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2505 - - - 0.0