Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2507 ATGGCCGGCGAGGCGGCTCCGGCGAGGAATGTTCTGTTTGGGAAATACGAAATGGGGCGGTTATTGGGGAAAGGGACCTTCGCGAAGGTTTATTACGGAAGAAACTTGATGACCCACGAAAGCGTCGCCATTAAAGTGATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTCGAGCAAATCCGGCGAGAAATTTCTGTAATGGGGTTGGTTCGTCATCCCCATATTGTGAAATTGAAAGAAGTAATGGCGACGAAATCCAAGGTGTATTTTGTGATGGAGTACGTTAATGGAGGCGAACTGTTTGTGAAAATGTCTGAACGAGGAAAATTGTCAGAAGATGAAGCTAGAAAGTACTTTCAACAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGAGAATGGGAACTTGAAGGTCTCTGATTTTGGCCTCTCCGCCCTGCCGGAGCAGCTCAGAATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCGGAGGTGCTCAGAAAGAGAGGCTACGACGGCGCTAAGGCGGATATTTGGTCTTGTGGAGTGATTCTGTTTGTTTTGCTTGCTGGGACTTTGCCATTTAGAGCTGATAATGTAATCAAATTGTATAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTACTTCAGAAGCCATGGAAATGGTTTCCAAGGTTCTGGTTGTTGATCCTAAGAAAAGGGTTTCAATGGCTGAGATAATGGCAAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTGTCATTTAGTGAGAAAGATGAGTTCAACAATGAGATTTCTGAATTAGGAAATCCTAAATTATTATTGTCATCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAACCAAGAAGAAACAAGCCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTGTAGCCAAGCTTCAATCTCTGGCTGTGAAGCTGAATTTCAAGGCTACTAATCTTAGGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGAAGGAAAGGGAAGTTGACCATGACGGCAGAGGTTTTCGAGGCTGCCCCGGAGCTGGCAATCGTCGAGTTCTCGAAGTCGGCCGGTGACACTTTTGAGTATAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAAAATGAGTGTCTATAA 1311 46.15 MAGEAAPARNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVKLKEVMATKSKVYFVMEYVNGGELFVKMSERGKLSEDEARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYDGAKADIWSCGVILFVLLAGTLPFRADNVIKLYRKIFKAEFEFPPWFTSEAMEMVSKVLVVDPKKRVSMAEIMASPWFQKGFTKPVSFSEKDEFNNEISELGNPKLLLSSSPPFYNAFEFISSMSSGFDLSSLFETKKKQASIFTSKCSASAIVAKLQSLAVKLNFKATNLREFKVRLQAKEEGRKGKLTMTAEVFEAAPELAIVEFSKSAGDTFEYNKFCEKDVRPALKDIVWSWQGENECL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 83996300 83998408 + Tan0004992.1 Tan04g2507 750911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2507 436 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Tan04g2507 436 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2507 436 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Tan04g2507 436 ProSiteProfiles NAF domain profile. 303 328 IPR018451 GO:0007165(InterPro)
Tan04g2507 436 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2507 436 CDD CIPK_C 309 423 - -
Tan04g2507 436 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2507 436 Gene3D Kinase associated domain 1, KA1 305 428 - -
Tan04g2507 436 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Tan04g2507 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2507 436 Pfam NAF domain 305 360 IPR004041 GO:0007165(InterPro)
Tan04g2507 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 420 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan04g2507 436 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Tan04g2507 436 CDD STKc_SnRK3 15 270 - -
Tan04g2507 436 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Tan04g2507 436 FunFam Non-specific serine/threonine protein kinase 9 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2507 Tan-Chr4:83996300 Tan09g1553 Tan-Chr9:67372585 1.10E-133 dispersed
Tan09g1797 Tan-Chr9:69441044 Tan04g2507 Tan-Chr4:83996300 9.80E-21 dispersed
Tan01g3907 Tan-Chr1:104041169 Tan04g2507 Tan-Chr4:83996300 3.00E-42 transposed
Tan10g0942 Tan-Chr10:8201002 Tan04g2507 Tan-Chr4:83996300 8.90E-33 transposed
Tan01g3571 Tan-Chr1:100695837 Tan04g2507 Tan-Chr4:83996300 9.20E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67497 PF00069 Pkinase 5.50E-76 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2507 - - - 0.0