Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2508 ATGGCTGCTGGAGGGTCTAATTCTGGGCAGCCACAGTTCCTGTCTAGAGCTGGAAATGAGAGTTTTTCGCACGCACCGTTGATCGAGAACCCAGAAACTGATCAGATTGTTGTTCCTGATAGGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCAGGATTTCTTGTTTCTATTGCTTATATTGATCCTGGGAATTTTGAAACCGATCTGCAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATACTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCCTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGCGGCGTTCTTCTGACAGGGCTTAGTACACTAGTCCTTCTTGGGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCATTTCTTGTCTTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGTTATGCACAGCCTGATGTCGGAGAAATTTTTTATGGGTTATTCGTCCCCCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCTCGATCTGTTTCTGGCATCAAGGAAGCTTGCACATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCCTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAAGAGGACCAAATGAGCTGCAGTGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCCAAACTTTTTGCCATTGCTCTGTTAGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGACGCCATGGATCCGAAACTTTTTAACGCGAAGCTTAGCCATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGTTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCATTCCTCTTCTGAAGTTTACAAGCAGCAAGACGAAGATGGGACCACATGTCAACTCCACCACGATTACGGTACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCGTAACCCGTTTCATCCACGTGCTTCTTCACAACGATCTCGAACTCGTAGCAGTTGTTTTCATAGGGATACTAGGATTTTCAGGCATGGCATTATATTTAGCAGGAATTGCTTATCTGGTTTTTAGAAAGACCAAGGAGATCACTCATCTCTTAGCTCTAACAACAGAAGAAAGTCTACGACTGAGCAACGAGTCGAGTAAGACATCGGGACGCGAAGATATAGTAAGCATGCAGTTGCCTCAAAGAAGTAGAACAACCAATGATGTAAACTGA 1626 42.74 MAAGGSNSGQPQFLSRAGNESFSHAPLIENPETDQIVVPDRKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLVLLGLQQYGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACTFYMIESGFALLVAFLINVSVISVSGAVCNSPDLNKEDQMSCSDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGPHVNSTTITVLTWIIGFLIMAINIYYLVTRFIHVLLHNDLELVAVVFIGILGFSGMALYLAGIAYLVFRKTKEITHLLALTTEESLRLSNESSKTSGREDIVSMQLPQRSRTTNDVN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 84010256 84016121 + Tan0011904.1 Tan04g2508 750912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2508 541 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 NCBIfam Nramp family divalent metal transporter 52 420 - -
Tan04g2508 541 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 499 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 Hamap Divalent metal cation transporter MntH [mntH]. 31 455 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Tan04g2508 541 Pfam Natural resistance-associated macrophage protein-like 67 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2508 Tan-Chr4:84010256 Tan11g1251 Tan-Chr11:10668825 2.40E-170 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2508 K21398 - csv:101209649 961.829