Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2514 | ATGGACACCGAGGAAGCTCCGTCGACTCCGGTGACGCCGGGGACGCCCGGAGCCCCGCTTTTTGGAGGACACAAGGGAAATCATCACCATGGAAGTGAGAATGGTAAAAGATCTCTTCTTAAAAGTTGCATCTCCTTCAATGTTGATGATTGGGGCACTGAAGAAGGAGGCTTATCTAAAGTCTCTTGTTCATTTCCACCCCCTCCTGTCTCACTTGCAAGAAAGGTAGGAGCGGAGTTCATTGGCACTTTGATGCTCATTTTCGCTGGAACGGCCACCGCCATCGTGAACCAAAAGACGCAAGGAACCGAAACGCTCATCGGCCTAGCGGCCTCCACCGGCATTGCAGTGATGGTCGTCATCTTGTCGACCGGCCACATCTCCGGAGCCCATCTGAACCCGGCCATCACCATTGCTTTCGCTGCACTAAAGCACTTTCCATGGAAGCAGGTGCCATTGTATATTGGAGCTCAAATGGTGGCTTCTCTATGTGCTTCATTTGCATTAAAATGGATCTTTGATCCCATAATGAGTGGAGGAGTGACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCGGTCGCCATTGATACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCGGTTGGAGCAACAGTCATGCTCAATATACTCATCGCCGGAGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCTGCAAACAATTTTAGAGCAATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGATGAAGATGGTGATGCACGCTTGCCTTCTACTGCAAGAAGCTTTCGAAGATGA | 909 | 49.61 | MDTEEAPSTPVTPGTPGAPLFGGHKGNHHHGSENGKRSLLKSCISFNVDDWGTEEGGLSKVSCSFPPPPVSLARKVGAEFIGTLMLIFAGTATAIVNQKTQGTETLIGLAASTGIAVMVVILSTGHISGAHLNPAITIAFAALKHFPWKQVPLYIGAQMVASLCASFALKWIFDPIMSGGVTVPSCGYAQAFALEFIISFNLMFVITAVAIDTRAVGELAGIAVGATVMLNILIAGETTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDEDGDARLPSTARSFRR | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 84183998 | 84191269 | + | Tan0018099.1 | Tan04g2514 | 750918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2514 | 302 | SUPERFAMILY | Aquaporin-like | 71 | 288 | IPR023271 | - | |
Tan04g2514 | 302 | Pfam | Major intrinsic protein | 71 | 279 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | Gene3D | Glycerol uptake facilitator protein. | 67 | 291 | IPR023271 | - | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 262 | 282 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 113 | 137 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 74 | 93 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 194 | 212 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 225 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | PRINTS | Major intrinsic protein family signature | 150 | 169 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2514 | 302 | FunFam | Aquaporin NIP2-1 | 62 | 293 | - | - | |
Tan04g2514 | 302 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Tan04g2514 | 302 | ProSitePatterns | MIP family signature. | 131 | 139 | IPR022357 | - | |
Tan04g2514 | 302 | PANTHER | AQUAPORIN NIP2-1 | 70 | 287 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2514 | Tan-Chr4:84183998 | Tan07g0174 | Tan-Chr7:4313955 | 2.40E-95 | dispersed | |
Tan04g2514 | Tan-Chr4:84183998 | Tan06g0273 | Tan-Chr6:2170720 | 1.20E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2514 | K09874 | - | csv:101207376 | 531.561 |