Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2514 ATGGACACCGAGGAAGCTCCGTCGACTCCGGTGACGCCGGGGACGCCCGGAGCCCCGCTTTTTGGAGGACACAAGGGAAATCATCACCATGGAAGTGAGAATGGTAAAAGATCTCTTCTTAAAAGTTGCATCTCCTTCAATGTTGATGATTGGGGCACTGAAGAAGGAGGCTTATCTAAAGTCTCTTGTTCATTTCCACCCCCTCCTGTCTCACTTGCAAGAAAGGTAGGAGCGGAGTTCATTGGCACTTTGATGCTCATTTTCGCTGGAACGGCCACCGCCATCGTGAACCAAAAGACGCAAGGAACCGAAACGCTCATCGGCCTAGCGGCCTCCACCGGCATTGCAGTGATGGTCGTCATCTTGTCGACCGGCCACATCTCCGGAGCCCATCTGAACCCGGCCATCACCATTGCTTTCGCTGCACTAAAGCACTTTCCATGGAAGCAGGTGCCATTGTATATTGGAGCTCAAATGGTGGCTTCTCTATGTGCTTCATTTGCATTAAAATGGATCTTTGATCCCATAATGAGTGGAGGAGTGACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCGGTCGCCATTGATACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCGGTTGGAGCAACAGTCATGCTCAATATACTCATCGCCGGAGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCTGCAAACAATTTTAGAGCAATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGATGAAGATGGTGATGCACGCTTGCCTTCTACTGCAAGAAGCTTTCGAAGATGA 909 49.61 MDTEEAPSTPVTPGTPGAPLFGGHKGNHHHGSENGKRSLLKSCISFNVDDWGTEEGGLSKVSCSFPPPPVSLARKVGAEFIGTLMLIFAGTATAIVNQKTQGTETLIGLAASTGIAVMVVILSTGHISGAHLNPAITIAFAALKHFPWKQVPLYIGAQMVASLCASFALKWIFDPIMSGGVTVPSCGYAQAFALEFIISFNLMFVITAVAIDTRAVGELAGIAVGATVMLNILIAGETTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDEDGDARLPSTARSFRR 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 84183998 84191269 + Tan0018099.1 Tan04g2514 750918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2514 302 SUPERFAMILY Aquaporin-like 71 288 IPR023271 -
Tan04g2514 302 Pfam Major intrinsic protein 71 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 Gene3D Glycerol uptake facilitator protein. 67 291 IPR023271 -
Tan04g2514 302 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2514 302 FunFam Aquaporin NIP2-1 62 293 - -
Tan04g2514 302 MobiDBLite consensus disorder prediction 1 34 - -
Tan04g2514 302 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Tan04g2514 302 PANTHER AQUAPORIN NIP2-1 70 287 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2514 Tan-Chr4:84183998 Tan07g0174 Tan-Chr7:4313955 2.40E-95 dispersed
Tan04g2514 Tan-Chr4:84183998 Tan06g0273 Tan-Chr6:2170720 1.20E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2514 K09874 - csv:101207376 531.561