Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2523 ATGGCGAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCATTACTGAAGACAAGAATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCGGCCAGAGCATACGACGAAGCAGCCAGAATCATATGTTGCCCAACCAATCACAACGCGCCACCTCACTCCTCGTCGGCGCCGCCGTCCAAGCTTCTAACTCCGACATTGATCGACAAGTTGCAGAGATGTCGAATGGCTTCTCTCCAAATGCCCAAAAAGCAAATCCCCACCAAAACCCATTTCTCCGACAGGAAATCCGCCGACCCAAGTCGCCGTCCGTCCACCAAAATCGAAGCCGGAGGCGGCGGTCACTGGCCGGAGACGGGCGGCAAATGGGTCGCCGGCGGAGAGGCTCAGGAGGTCGGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATCTTAATAATATTGGTTCTACAAATAATTAG 549 52.82 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIICCPTNHNAPPHSSSAPPSKLLTPTLIDKLQRCRMASLQMPKKQIPTKTHFSDRKSADPSRRPSTKIEAGGGGHWPETGGKWVAGGEAQEVGRLEDDHVEQMIQELLDLGSFEFCPNNNNLNNIGSTNN 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 84285541 84287458 + Tan0011145.1 Tan04g2523 750927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2523 182 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Tan04g2523 182 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677(InterPro)
Tan04g2523 182 Gene3D AP2/ERF domain 6 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 FunFam Ethylene-responsive transcription factor 2 6 62 - -
Tan04g2523 182 SMART rav1_2 7 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 MobiDBLite consensus disorder prediction 100 115 - -
Tan04g2523 182 Pfam AP2 domain 7 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2523 182 MobiDBLite consensus disorder prediction 92 133 - -
Tan04g2523 182 ProSiteProfiles AP2/ERF domain profile. 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2751 Tan-Chr2:95766580 Tan04g2523 Tan-Chr4:84285541 8.60E-40 dispersed
Tan04g2523 Tan-Chr4:84285541 Tan04g2588 Tan-Chr4:85134294 5.70E-20 dispersed
Tan01g3590 Tan-Chr1:100944558 Tan04g2523 Tan-Chr4:84285541 4.10E-41 wgd
Tan04g2523 Tan-Chr4:84285541 Tan06g0461 Tan-Chr6:3338953 4.50E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27326 PF00847 AP2 4.80E-11 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2523 - - - 0.0