Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2588 | ATGGCGAAGCAAAAGAAATTCAGAGGAGTGAGGCAACGCCGGTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTCTTCTGAAGAGGAGGGTTTGGTTAGGGACGTTCGACACAGCCGAAGAAGCAGCCCGAGCCTACGACGAGGCTGCCGTGCTCATGTGTGGTCGAACCGCCAAAACCAACTTTCCTGTGGCAACTGCTACCGTTATGAGTGAAGCTAGAAACTTTCCTCCATTTTTGGACACTGCCATTTCAAGCATGGTATCGTCGCCATTATCCGAAACTCTAAACGCTAAACTTCGCAAGTGTTGCAAATCTCTCCCACCTTCCCTGACCTGCCTCCGCCTCGACACCGAGAGTTGTCGCATTGGCGTCTGGCAGAGACGTGCAGGAGATCGTCGAGTTTCCGACTCGAACTGGGTGATGATGGTGCAGCTCGAGAAGAAGAACGACGACGAATTTTCAGTGACAGAGTCACCGGAAAAGGACATGGAAGAGGTGAAGCTATCAAGTGCCGAAGAAAGTTTAGATGATGAAGAAAGAGTTGCTTTGCAGATGATTGAAGAACTTTTGAATAAGATATGA | 585 | 50.09 | MAKQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAVLMCGRTAKTNFPVATATVMSEARNFPPFLDTAISSMVSSPLSETLNAKLRKCCKSLPPSLTCLRLDTESCRIGVWQRRAGDRRVSDSNWVMMVQLEKKNDDEFSVTESPEKDMEEVKLSSAEESLDDEERVALQMIEELLNKI | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 85134294 | 85136099 | + | Tan0001410.1 | Tan04g2588 | 750992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2588 | 194 | Coils | Coil | 162 | 189 | - | - | |
Tan04g2588 | 194 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 148 | IPR050913 | - | |
Tan04g2588 | 194 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) | |
Tan04g2588 | 194 | MobiDBLite | consensus disorder prediction | 151 | 175 | - | - | |
Tan04g2588 | 194 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2588 | 194 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2523 | Tan-Chr4:84285541 | Tan04g2588 | Tan-Chr4:85134294 | 5.70E-20 | dispersed | |
Tan04g2588 | Tan-Chr4:85134294 | Tan09g1407 | Tan-Chr9:66205355 | 8.20E-49 | dispersed | |
Tan01g3651 | Tan-Chr1:101400068 | Tan04g2588 | Tan-Chr4:85134294 | 4.40E-50 | wgd | |
Tan04g2588 | Tan-Chr4:85134294 | Tan08g0245 | Tan-Chr8:2147093 | 3.80E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27329 | PF00847 | AP2 | 1.30E-13 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2588 | - | - | - | 0.0 |