Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2588 ATGGCGAAGCAAAAGAAATTCAGAGGAGTGAGGCAACGCCGGTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTCTTCTGAAGAGGAGGGTTTGGTTAGGGACGTTCGACACAGCCGAAGAAGCAGCCCGAGCCTACGACGAGGCTGCCGTGCTCATGTGTGGTCGAACCGCCAAAACCAACTTTCCTGTGGCAACTGCTACCGTTATGAGTGAAGCTAGAAACTTTCCTCCATTTTTGGACACTGCCATTTCAAGCATGGTATCGTCGCCATTATCCGAAACTCTAAACGCTAAACTTCGCAAGTGTTGCAAATCTCTCCCACCTTCCCTGACCTGCCTCCGCCTCGACACCGAGAGTTGTCGCATTGGCGTCTGGCAGAGACGTGCAGGAGATCGTCGAGTTTCCGACTCGAACTGGGTGATGATGGTGCAGCTCGAGAAGAAGAACGACGACGAATTTTCAGTGACAGAGTCACCGGAAAAGGACATGGAAGAGGTGAAGCTATCAAGTGCCGAAGAAAGTTTAGATGATGAAGAAAGAGTTGCTTTGCAGATGATTGAAGAACTTTTGAATAAGATATGA 585 50.09 MAKQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAVLMCGRTAKTNFPVATATVMSEARNFPPFLDTAISSMVSSPLSETLNAKLRKCCKSLPPSLTCLRLDTESCRIGVWQRRAGDRRVSDSNWVMMVQLEKKNDDEFSVTESPEKDMEEVKLSSAEESLDDEERVALQMIEELLNKI 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 85134294 85136099 + Tan0001410.1 Tan04g2588 750992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2588 194 Coils Coil 162 189 - -
Tan04g2588 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 148 IPR050913 -
Tan04g2588 194 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Tan04g2588 194 MobiDBLite consensus disorder prediction 151 175 - -
Tan04g2588 194 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2588 194 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2523 Tan-Chr4:84285541 Tan04g2588 Tan-Chr4:85134294 5.70E-20 dispersed
Tan04g2588 Tan-Chr4:85134294 Tan09g1407 Tan-Chr9:66205355 8.20E-49 dispersed
Tan01g3651 Tan-Chr1:101400068 Tan04g2588 Tan-Chr4:85134294 4.40E-50 wgd
Tan04g2588 Tan-Chr4:85134294 Tan08g0245 Tan-Chr8:2147093 3.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27329 PF00847 AP2 1.30E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2588 - - - 0.0