Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2631 ATGTTTAAGCTTCAATGGCTTGTTCTTCCTCTCGTTGCAATTTTAGCTTGCTTGTCTTTTTGTATAGGAGATAATGTCACCTATGATTCAAATGCCATAATTATCAATGGTGAACGACGCATTATCTTCTCAGGTTCGATTCATTATCCACGAAGCACCGAAGAGATGTGGCCTGATCTTATACAAAAAGCTAAAGATGGTGGACTTGATGCAATCGAGACATACATTTTTTGGGATCGTCATGAGCCTCAACGACGAAAATATGATTTCTCTGGAAATCTAGATTTTATCAAATTCTTCCAGCTTATCCAAGATGCAGGACTTTACGTTGTCATGAGGATTGGTCCTTACGTGTGTGCTGAGTGGAACTACGGAGGCTTTCCACTGTGGTTGCACAATATGCCGGGAATCCAACTACGAACTGACAATCAAGTGTACAAGAATGAAATGCAAACTTTCACGACAAAAATAGTGAATATGTGTAAACAAGCAAACCTCTTTGCATCACAAGGGGGACCCATAATTTTAGCTCAAATCGAGAATGAGTATGGAAATGTAATGACACCTTACGGAGATGCAGGAAAAGCATATATCAATTGGTGCGCTCAAATGGCTGAATCTCTCAATATTGGCGTTCCATGGATCATGTGCCAACAGAGTGATGCCCCACAACCTATCATTAATACATGCAATGGATTTTATGTGACAACTTCACTCCTAACAATCCTAACAACCCAAAAATGTTTAACTGAAAATTGGGTGGGATGCATTTTTACTGTGGCAAGATTTTTTCAATCCGGTGGTGTGTTCAACAATTATTACATGTATCATGGAGGCACCAACTTTGGAAGAACATCGGGAGGTCCATTCATCACTACGTCTTATGATTACAACGCCCCACTTGATGAATATGGGAACTTGAATCAACCCAAATGGGGCATCTCAAACAACTCCACTTTAACGAAATTCTCTAACTCAGCAACAGGGAAAATGTTTTGCTTTTTGAGCAATGCAGATGGCAACAATGATGCCACCATAGATTTGCAGGCAAATGGAAAATATTTTGTGCCAGCTTGGTCTGTGAGCATTCTTGATGGTTGCAACAAGGAGGTTTACAACACTGCAAAGGTTAATTCTCAAACATCTATGTTTGTGAAGGAACAAAATGAGAAGGAAAATGCACAACTCTCGTGGAGTTGGGCTCCGGAGCCCATGAGAGACACCCTACAAGGAAAGGGTACATTTAAGGCAAACCTTCTTTTGGAACAAAAAGGAACCACGGTTGATTTCAGCGACTACTTTTGGTACATGACATATGTTGACACCAACGCAACATCTTTTGTTCAAAATGTGACTTTTCAAGTGAAAACAAAGGGTCATGTGCTTCATGCTTTTGTAAATGGAAGGTATATTGGGTCCCAGTGGGGGAGCAATGGGCAGAGTTTTGTGTTTGAGAAACCCATTCTATTAAAATCGGGATCCAACACCATAACTCTTTTGAGTGCTACAGTTGGACTGAAGAATTACGATGCATTTTACGACACAGTACCAACAGGAATTGATGGAGGTCCCATTTATTTGATCGGAGATGGAAATGTCACAACTGATTTGTCATCAAATCTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAACTTTACAACCCGACTTTCTCACAGAGAACAAAATGGAGCGCATTAAATCAAAAATCTATTGGAAGGCGAATGACATGGTACAAAACTAGCTTTAAGACCCCTTCAGAGTTGACCCGAGAGCATTGGACATGCAAGGAATGGGAAAAGGCCGGAGCTTGGGTAAATGGGCGAAGCATAGGCCGATTTTGGCCTTCTTTCATTGCTGGCAATGATAGTTGCAGTGTCACCTGTGACTACAGAGGCGCATATGACCCTAGCAAATGTGTTGGAAATTGTGGGAATCCTTCTCAACGATGGTATCACATCCCAAGATCGTTTCTTTCAGTTGAAATAAACACGTTGATTTTATTTGAAGAGATTGGTGGAAATCCTCAACAAGTGTCAGTTCAAACCATCACCATAGGAACTATATGTGGAAATGCTAATGAAGGAAGCACCTTAGAATTGTCTTGTCAGGTAGGACATATCATCTCTGAAATCCAATTTGCTAGCTATGGTGATCCACAGGGAAAATGTGGCTCGTTTAAACAAGGCTTATGGAATGTGGAAAACAGCGCTCTTGTGGTGGAAAAGACTTGCATTGGTATGGAAAATTGTTCAATTGATGTATCTACGAATTCGTTTGGATTAGGCAATGCCACGAATCTATCTGCAAGACTGGCAGTTCAAGCACTTTGCTCAAAGAATCGAGAGATGTAA 2361 40.66 MFKLQWLVLPLVAILACLSFCIGDNVTYDSNAIIINGERRIIFSGSIHYPRSTEEMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGNLDFIKFFQLIQDAGLYVVMRIGPYVCAEWNYGGFPLWLHNMPGIQLRTDNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPIINTCNGFYVTTSLLTILTTQKCLTENWVGCIFTVARFFQSGGVFNNYYMYHGGTNFGRTSGGPFITTSYDYNAPLDEYGNLNQPKWGISNNSTLTKFSNSATGKMFCFLSNADGNNDATIDLQANGKYFVPAWSVSILDGCNKEVYNTAKVNSQTSMFVKEQNEKENAQLSWSWAPEPMRDTLQGKGTFKANLLLEQKGTTVDFSDYFWYMTYVDTNATSFVQNVTFQVKTKGHVLHAFVNGRYIGSQWGSNGQSFVFEKPILLKSGSNTITLLSATVGLKNYDAFYDTVPTGIDGGPIYLIGDGNVTTDLSSNLWSYKVGLNGEMKQLYNPTFSQRTKWSALNQKSIGRRMTWYKTSFKTPSELTREHWTCKEWEKAGAWVNGRSIGRFWPSFIAGNDSCSVTCDYRGAYDPSKCVGNCGNPSQRWYHIPRSFLSVEINTLILFEEIGGNPQQVSVQTITIGTICGNANEGSTLELSCQVGHIISEIQFASYGDPQGKCGSFKQGLWNVENSALVVEKTCIGMENCSIDVSTNSFGLGNATNLSARLAVQALCSKNREM 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 85709122 85711606 - Tan0013908.1 Tan04g2631 751035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2631 786 PANTHER BETA-GALACTOSIDASE RELATED 13 717 IPR001944 GO:0004553(InterPro)|GO:0004565(PANTHER)|GO:0005618(PANTHER)|GO:0005773(PANTHER)|GO:0005975(InterPro)
Tan04g2631 786 SUPERFAMILY (Trans)glycosidases 24 315 IPR017853 -
Tan04g2631 786 Pfam Galactose binding lectin domain 703 780 IPR000922 GO:0030246(InterPro)
Tan04g2631 786 SUPERFAMILY Galactose-binding domain-like 540 699 IPR008979 -
Tan04g2631 786 Gene3D - 547 689 - -
Tan04g2631 786 Gene3D - 690 785 IPR043159 -
Tan04g2631 786 Pfam Beta-sandwich domain in beta galactosidase 321 377 IPR041392 -
Tan04g2631 786 SUPERFAMILY Galactose-binding domain-like 362 512 IPR008979 -
Tan04g2631 786 CDD Gal_Rha_Lectin_BGal 693 780 - -
Tan04g2631 786 ProSiteProfiles SUEL-type lectin domain profile. 695 781 IPR000922 GO:0030246(InterPro)
Tan04g2631 786 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Tan04g2631 786 Pfam Beta-galactosidase, galactose-binding domain 578 666 IPR048913 -
Tan04g2631 786 Pfam Beta-galactosidase, galactose-binding domain 433 495 IPR048913 -
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 269 284 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 603 619 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 289 305 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 576 590 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553(InterPro)|GO:0005975(InterPro)
Tan04g2631 786 Gene3D Glycosidases 21 323 - -
Tan04g2631 786 FunFam Beta-galactosidase 22 322 - -
Tan04g2631 786 Pfam Glycosyl hydrolases family 35 33 240 IPR031330 -
Tan04g2631 786 Pfam Glycosyl hydrolases family 35 257 313 IPR031330 -
Tan04g2631 786 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2631 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2625 Tan-Chr4:85568848 Tan04g2631 Tan-Chr4:85709122 0.00E+00 dispersed
Tan04g2627 Tan-Chr4:85607541 Tan04g2631 Tan-Chr4:85709122 1.10E-187 dispersed
Tan04g2628 Tan-Chr4:85665475 Tan04g2631 Tan-Chr4:85709122 2.60E-193 dispersed
Tan04g2631 Tan-Chr4:85709122 Tan10g1358 Tan-Chr10:16671927 0.00E+00 dispersed
Tan04g2631 Tan-Chr4:85709122 Tan04g2633 Tan-Chr4:85759703 7.00E-99 proximal
Tan04g2631 Tan-Chr4:85709122 Tan04g2632 Tan-Chr4:85750728 1.30E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g945 . . . . . . . . . . . . Car06g01059 . Sed05g1470 Cpe08g00407 . Bhi01g00206 Tan04g2631 Cmetu04g2155 . . . . . . . . . . . . . Cone7ag0405 . Lsi05g01854 . . Cme06g00372 . . Bda11g00341 . . Bpe13g00865 . Bma06g01275 . Cmo06g01243 . . . . . . . . . . . . . . Cla05g00336 . Cec05g0372 . . . . . Csa03g01083 Chy06g00352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000011 2 3 2 1 2 32 3 31 31 17 21 11 10 19 22 9 17 1 8 15 7 8 7 4 10 20 3 7 10 2 335