Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2664 ATGGGCGCCGACATGTCGAACAATAATCGCCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCCGCGCTTTCTCTTACTCTCGCGGGAATTTTTCGTCGGGGCGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGATGATGGTAGCGGAGGAGCGAGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTCAGGACCGGTGAGGTCGAGATCGGACGACGATTTCGACGGCGGAGGAGTGCATGAGGAGAATGAAGATGGGGATAATCATGGGTGTCATGTGAAGAGAAGGAAGAAATATCATCGGCATACCACTGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAATCGCCACATCCGGATGAGAAGCAAAGGCAGCAACTTAGCAAGAGATTAGGGCTTTCACCAAGGCAGGTCAAATTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGCCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAAATTAACAAGAAAAAAATTGGCTGCCCAAGCTGTGGCACTGCTGACACTGGGGAAGACCATGGCGCATTGACAACTACGGAGCAATTACGTATTAAGAATGCCAAACTCAAAGCTGAGGTTGAAAAACTACGAGCAGCATTAGGAAAACACCCAGAAGCAGCAGCCTCTCCTTCATACTCATCTGGAAATTACGACCAAGATCAGACAAACCGAAGCTGCTTAGATTTTTACACAGGAATTTTTGGGCTTGAAAAGCCAAGGATCATGGAGAAGGTTCATCAAGCTCTTCAAGAGCTCAAAACAATGGCTGCCGCCGGCGAGCCACTTTGGGTCCGTAGCGTCGAGACGGGAAGAGAGATTTTAAACTACGACGAGTACTTGAAAACATTCCATCTCAAAAATTCGAACACTTGTTGGCTCAATAGACACATCGAGGCCTCTCGAGACACGACCGTTGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCTAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATAATGGCACAGTGCAATTGATGTTTGCAGAGGTACAAATGCTTACACCATTAGTGCCCACTAGAGAAATGTATTTCATACGCCATTGCAAGCAGCTCGACGCTGAACAGTGGGCGATCGTCGATGTTTCGATCGAAAACGTTGAAGATAACGATATCGATGCTTCGTTGGTGAAATGCAGAAAACGTCCTTCTGGTTTTATTATTAAAGATGAATCTAATGGCCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAAAAGGAAAGTTCATAATTTGTACCGCAGCATAGTGAACAATGGGACTGCCTTTGGAGCAAGACATTGGATGGCAACACTTCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCTACCAACATTCCCATGAAAGACTCAACTGGAGTTTCAACACTGGCTGGAAGAAAAAGCACTTTGAAGTTGGCACAAAGAATGGCTTCAAGCTTCTCACAAGCAGTTGCAGCTTCAAGTTTCCAAACATGGACCAAAATTGTGGGTAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTAAGTGACCCTGGGGAACCCATTGGTGTTATTTTATGTGCAGTTTCTTCTTTATGGTTGCCTGTTTCTCCTCATGTTCTCTTCGATTTCTTGAGAGACGAAACTCGCAGAAACGAGTGGGACGCTATGTTTGGTGGAGATAAAGCTCAGTCGATTGCAAATTTGGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGACAGAAGCAACAGCAGCATGTGGATTCTCCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTCTATTCCGGAGTAGACATTTCCGGCATGCAGTCGGTGATGACCGGCTGTGATTCCGGCAGCCTCACCATCCTCCCATCAGGCTTTTCAATTCTCCCCGACGGCGCTGAGTCCAGACCCCTCCTCATCACTCGCCGGAAAGACCACAAATCCGCCGACACCCACGGCGGCGCTCTACTCACCGCCGCCGTCCAAATTCTCACCGACGCCTCTCCCTCTGCAAAACCCACGGCGGAGTCGGTTGACTACGTTAAAAACATCGTTTCTTGTACGATCAAAAATATCAGAACCAGCATGTGCTGTGAGGATGATTAA 2295 46.71 MGADMSNNNRLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDAAEVSSENSGPVRSRSDDDFDGGGVHEENEDGDNHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREINKKKIGCPSCGTADTGEDHGALTTTEQLRIKNAKLKAEVEKLRAALGKHPEAAASPSYSSGNYDQDQTNRSCLDFYTGIFGLEKPRIMEKVHQALQELKTMAAAGEPLWVRSVETGREILNYDEYLKTFHLKNSNTCWLNRHIEASRDTTVVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEVANWNNGTVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNDIDASLVKCRKRPSGFIIKDESNGHCKVTMVEHLECEKRKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVSTLAGRKSTLKLAQRMASSFSQAVAASSFQTWTKIVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPVSPHVLFDFLRDETRRNEWDAMFGGDKAQSIANLAKGQDRGNSVTIQTIGSKDRSNSSMWILQDSSTNSSESMVVYSGVDISGMQSVMTGCDSGSLTILPSGFSILPDGAESRPLLITRRKDHKSADTHGGALLTAAVQILTDASPSAKPTAESVDYVKNIVSCTIKNIRTSMCCEDD 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86005115 86013856 - Tan0013324.1 Tan04g2664 751068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2664 764 Gene3D - 273 498 IPR023393 -
Tan04g2664 764 SMART HOX_1 99 161 IPR001356 GO:0003677(InterPro)
Tan04g2664 764 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677(InterPro)
Tan04g2664 764 Pfam Homeodomain 100 155 IPR001356 GO:0003677(InterPro)
Tan04g2664 764 SMART START_1 272 498 IPR002913 GO:0008289(InterPro)
Tan04g2664 764 SUPERFAMILY Homeodomain-like 86 158 IPR009057 -
Tan04g2664 764 Gene3D - 86 171 - -
Tan04g2664 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 761 IPR042160 -
Tan04g2664 764 FunFam Homeobox-leucine zipper protein HDG1 84 173 - -
Tan04g2664 764 MobiDBLite consensus disorder prediction 70 96 - -
Tan04g2664 764 CDD START_ArGLABRA2_like 267 497 - -
Tan04g2664 764 MobiDBLite consensus disorder prediction 35 62 - -
Tan04g2664 764 FunFam Homeobox-leucine zipper protein GLABRA 2 272 497 - -
Tan04g2664 764 Pfam START domain 276 498 IPR002913 GO:0008289(InterPro)
Tan04g2664 764 CDD homeodomain 100 155 IPR001356 GO:0003677(InterPro)
Tan04g2664 764 SUPERFAMILY Bet v1-like 265 499 - -
Tan04g2664 764 Coils Coil 208 228 - -
Tan04g2664 764 MobiDBLite consensus disorder prediction 35 107 - -
Tan04g2664 764 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g2664 764 ProSiteProfiles START domain profile. 263 501 IPR002913 GO:0008289(InterPro)
Tan04g2664 764 SUPERFAMILY Bet v1-like 520 696 - -
Tan04g2664 764 Coils Coil 156 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2664 Tan-Chr4:86005115 Tan06g2109 Tan-Chr6:69929122 3.60E-148 dispersed
Tan04g2664 Tan-Chr4:86005115 Tan06g0291 Tan-Chr6:2295997 1.30E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27332 PF01852 START 4.50E-56 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2664 K09338 - csv:101221341 1273.07