Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2676 ATGGAGTTGCCGGAGTATCTCGTCGGTGGCTACTACGGAGCCGGAGCCGGTCATTTTTCGCCAGAGAAGCAGAAATCCACTGTTGAGCATTTCGCTGTCGATGAATATCTATTGGATTTCTCGAATGAAGATGTGGCAATGACTAGCGGCTTCTTCGATAACGTCGCCGGAAATTGCAGTGATTCGTCGGCGGTAACTGCGATTGAGAGCTGTAATTCGTCGGTCTCCGGCGGGGATAACCAGTTATTAGGGAATTTTGGCTCTGGAAGCTTCTGTGAAGCTCAATTCTCGAGTGAACTCTGTATTCCGTGTGACGATTTGGCGGAACTCGAATGGCTTTCGAATTTCGTTGAAGATTCATTTTCAACAGAGGAGAATGAGAAGAATTTTGAGGCTGTTCCATACCTCTCCGGTACGGCGGCGACTCCAGAAACGCCGTCGTCCTCGGGAACTGCAAAAACGACACCATTTTTCCAACACGAAGCGCTCGCTCTACCCGGCAAGGCTCGAAGCAAACGGTCACGCGCACCTTGCGACTGGTCGACGCGCCTCCTCCAGGCGGCGGCTCCGGTGAAGTCCGAAACGACGTCGCCGTCGGGTCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGACCAATGGGCCCGAAAACACTCTGTAACGCTTGCGGGGTCCGATACAAGTCGGGTCGACTCGTACCGGAATACCGACCCGCCGCGAGTCCGACATTTGTGTCGACGAAGCATTCGAATTCGCACCGGAAAGTGATGGAGCTCCGACGGCAGAGGGAGCTGCAACACCAAGAGCAGTTTTTAAGTCAAAGTTCAATATTCAGCAGATCCAACGGCTGTGATGAGTATTTGATCCACCGTCCCAACGGCGGTGATTTCAGGCACATGCTGTAG 921 53.85 MELPEYLVGGYYGAGAGHFSPEKQKSTVEHFAVDEYLLDFSNEDVAMTSGFFDNVAGNCSDSSAVTAIESCNSSVSGGDNQLLGNFGSGSFCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEENEKNFEAVPYLSGTAATPETPSSSGTAKTTPFFQHEALALPGKARSKRSRAPCDWSTRLLQAAAPVKSETTSPSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQRELQHQEQFLSQSSIFSRSNGCDEYLIHRPNGGDFRHML 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86143676 86144748 + Tan0000361.1 Tan04g2676 751080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2676 306 ProSiteProfiles GATA-type zinc finger domain profile. 197 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 PANTHER GATA TRANSCRIPTION FACTOR 30 269 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan04g2676 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 261 - -
Tan04g2676 306 SMART GATA_3 197 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 FunFam GATA transcription factor 192 279 - -
Tan04g2676 306 PIRSF Txn_fac_GATA_plant 185 287 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan04g2676 306 PIRSF Txn_fac_GATA_plant 15 199 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan04g2676 306 CDD ZnF_GATA 202 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 Gene3D - 197 247 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan04g2676 306 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3930 Tan-Chr1:104188423 Tan04g2676 Tan-Chr4:86143676 1.20E-55 dispersed
Tan04g2676 Tan-Chr4:86143676 Tan11g0865 Tan-Chr11:7063307 1.10E-31 dispersed
Tan06g2340 Tan-Chr6:75462161 Tan04g2676 Tan-Chr4:86143676 7.20E-35 transposed
Tan10g1524 Tan-Chr10:23640838 Tan04g2676 Tan-Chr4:86143676 4.50E-27 transposed
Tan04g2676 Tan-Chr4:86143676 Tan06g0259 Tan-Chr6:2097840 8.00E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27333 PF00320 GATA 1.70E-14 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2676 - - - 0.0