Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2676 | ATGGAGTTGCCGGAGTATCTCGTCGGTGGCTACTACGGAGCCGGAGCCGGTCATTTTTCGCCAGAGAAGCAGAAATCCACTGTTGAGCATTTCGCTGTCGATGAATATCTATTGGATTTCTCGAATGAAGATGTGGCAATGACTAGCGGCTTCTTCGATAACGTCGCCGGAAATTGCAGTGATTCGTCGGCGGTAACTGCGATTGAGAGCTGTAATTCGTCGGTCTCCGGCGGGGATAACCAGTTATTAGGGAATTTTGGCTCTGGAAGCTTCTGTGAAGCTCAATTCTCGAGTGAACTCTGTATTCCGTGTGACGATTTGGCGGAACTCGAATGGCTTTCGAATTTCGTTGAAGATTCATTTTCAACAGAGGAGAATGAGAAGAATTTTGAGGCTGTTCCATACCTCTCCGGTACGGCGGCGACTCCAGAAACGCCGTCGTCCTCGGGAACTGCAAAAACGACACCATTTTTCCAACACGAAGCGCTCGCTCTACCCGGCAAGGCTCGAAGCAAACGGTCACGCGCACCTTGCGACTGGTCGACGCGCCTCCTCCAGGCGGCGGCTCCGGTGAAGTCCGAAACGACGTCGCCGTCGGGTCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGACCAATGGGCCCGAAAACACTCTGTAACGCTTGCGGGGTCCGATACAAGTCGGGTCGACTCGTACCGGAATACCGACCCGCCGCGAGTCCGACATTTGTGTCGACGAAGCATTCGAATTCGCACCGGAAAGTGATGGAGCTCCGACGGCAGAGGGAGCTGCAACACCAAGAGCAGTTTTTAAGTCAAAGTTCAATATTCAGCAGATCCAACGGCTGTGATGAGTATTTGATCCACCGTCCCAACGGCGGTGATTTCAGGCACATGCTGTAG | 921 | 53.85 | MELPEYLVGGYYGAGAGHFSPEKQKSTVEHFAVDEYLLDFSNEDVAMTSGFFDNVAGNCSDSSAVTAIESCNSSVSGGDNQLLGNFGSGSFCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEENEKNFEAVPYLSGTAATPETPSSSGTAKTTPFFQHEALALPGKARSKRSRAPCDWSTRLLQAAAPVKSETTSPSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQRELQHQEQFLSQSSIFSRSNGCDEYLIHRPNGGDFRHML | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 86143676 | 86144748 | + | Tan0000361.1 | Tan04g2676 | 751080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2676 | 306 | ProSiteProfiles | GATA-type zinc finger domain profile. | 197 | 233 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g2676 | 306 | PANTHER | GATA TRANSCRIPTION FACTOR | 30 | 269 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Tan04g2676 | 306 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 261 | - | - | |
Tan04g2676 | 306 | SMART | GATA_3 | 197 | 247 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g2676 | 306 | ProSitePatterns | GATA-type zinc finger domain. | 203 | 228 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g2676 | 306 | FunFam | GATA transcription factor | 192 | 279 | - | - | |
Tan04g2676 | 306 | PIRSF | Txn_fac_GATA_plant | 185 | 287 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Tan04g2676 | 306 | PIRSF | Txn_fac_GATA_plant | 15 | 199 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Tan04g2676 | 306 | CDD | ZnF_GATA | 202 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g2676 | 306 | Gene3D | - | 197 | 247 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Tan04g2676 | 306 | Pfam | GATA zinc finger | 203 | 237 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3930 | Tan-Chr1:104188423 | Tan04g2676 | Tan-Chr4:86143676 | 1.20E-55 | dispersed | |
Tan04g2676 | Tan-Chr4:86143676 | Tan11g0865 | Tan-Chr11:7063307 | 1.10E-31 | dispersed | |
Tan06g2340 | Tan-Chr6:75462161 | Tan04g2676 | Tan-Chr4:86143676 | 7.20E-35 | transposed | |
Tan10g1524 | Tan-Chr10:23640838 | Tan04g2676 | Tan-Chr4:86143676 | 4.50E-27 | transposed | |
Tan04g2676 | Tan-Chr4:86143676 | Tan06g0259 | Tan-Chr6:2097840 | 8.00E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27333 | PF00320 | GATA | 1.70E-14 | CL0167 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2676 | - | - | - | 0.0 |