Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2676 ATGGAGTTGCCGGAGTATCTCGTCGGTGGCTACTACGGAGCCGGAGCCGGTCATTTTTCGCCAGAGAAGCAGAAATCCACTGTTGAGCATTTCGCTGTCGATGAATATCTATTGGATTTCTCGAATGAAGATGTGGCAATGACTAGCGGCTTCTTCGATAACGTCGCCGGAAATTGCAGTGATTCGTCGGCGGTAACTGCGATTGAGAGCTGTAATTCGTCGGTCTCCGGCGGGGATAACCAGTTATTAGGGAATTTTGGCTCTGGAAGCTTCTGTGAAGCTCAATTCTCGAGTGAACTCTGTATTCCGTGTGACGATTTGGCGGAACTCGAATGGCTTTCGAATTTCGTTGAAGATTCATTTTCAACAGAGGAGAATGAGAAGAATTTTGAGGCTGTTCCATACCTCTCCGGTACGGCGGCGACTCCAGAAACGCCGTCGTCCTCGGGAACTGCAAAAACGACACCATTTTTCCAACACGAAGCGCTCGCTCTACCCGGCAAGGCTCGAAGCAAACGGTCACGCGCACCTTGCGACTGGTCGACGCGCCTCCTCCAGGCGGCGGCTCCGGTGAAGTCCGAAACGACGTCGCCGTCGGGTCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGACCAATGGGCCCGAAAACACTCTGTAACGCTTGCGGGGTCCGATACAAGTCGGGTCGACTCGTACCGGAATACCGACCCGCCGCGAGTCCGACATTTGTGTCGACGAAGCATTCGAATTCGCACCGGAAAGTGATGGAGCTCCGACGGCAGAGGGAGCTGCAACACCAAGAGCAGTTTTTAAGTCAAAGTTCAATATTCAGCAGATCCAACGGCTGTGATGAGTATTTGATCCACCGTCCCAACGGCGGTGATTTCAGGCACATGCTGTAG 921 53.85 MELPEYLVGGYYGAGAGHFSPEKQKSTVEHFAVDEYLLDFSNEDVAMTSGFFDNVAGNCSDSSAVTAIESCNSSVSGGDNQLLGNFGSGSFCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEENEKNFEAVPYLSGTAATPETPSSSGTAKTTPFFQHEALALPGKARSKRSRAPCDWSTRLLQAAAPVKSETTSPSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQRELQHQEQFLSQSSIFSRSNGCDEYLIHRPNGGDFRHML 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86143676 86144748 + Tan0000361.1 Tan04g2676 751080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2676 306 ProSiteProfiles GATA-type zinc finger domain profile. 197 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 PANTHER GATA TRANSCRIPTION FACTOR 30 269 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan04g2676 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 261 - -
Tan04g2676 306 SMART GATA_3 197 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 FunFam GATA transcription factor 192 279 - -
Tan04g2676 306 PIRSF Txn_fac_GATA_plant 185 287 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan04g2676 306 PIRSF Txn_fac_GATA_plant 15 199 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan04g2676 306 CDD ZnF_GATA 202 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g2676 306 Gene3D - 197 247 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan04g2676 306 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2676 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3930 Tan-Chr1:104188423 Tan04g2676 Tan-Chr4:86143676 1.20E-55 dispersed
Tan04g2676 Tan-Chr4:86143676 Tan11g0865 Tan-Chr11:7063307 1.10E-31 dispersed
Tan06g2340 Tan-Chr6:75462161 Tan04g2676 Tan-Chr4:86143676 7.20E-35 transposed
Tan10g1524 Tan-Chr10:23640838 Tan04g2676 Tan-Chr4:86143676 4.50E-27 transposed
Tan04g2676 Tan-Chr4:86143676 Tan06g0259 Tan-Chr6:2097840 8.00E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g303 Blo05g00081 Blo06g00706 . Bda10g00830 Bpe06g00746 Bpe10g00664 . . Cmo08g00689 Cmo17g00746 Cma01g00100 Cma14g01295 Car01g00085 Car14g01147 Sed06g2170 Cpe12g00660 Cpe17g00539 Bhi01g03395 Tan04g2676 Cmetu04g3117 Lac11g0763 Hepe02g1433 . . Cla07g01259 Cam07g1241 Cec07g1441 Cco07g1399 Clacu07g1325 Cmu07g1301 Cre07g1683 Cone20ag1264 Cone17ag0146 Cone16ag0712 Cone2ag0319 Lsi02g02999 Csa07g02450 Chy04g00936 Cme01g02907 . . . . . . . Bma15g00355 . Cmo01g00103 Cmo14g01329 Cma08g00726 Cma17g00778 Car08g00614 Car17g00719 Cpe02g01690 Cpe03g01098 Bhi09g00450 . . . . . . Cla09g00007 Cam09g0008 Cec09g0008 Cco09g0007 Clacu09g0009 . Cre09g0006 Lsi07g00519 . . Cme04g01124
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013047 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27333 PF00320 GATA 1.70E-14 CL0167 Tan TF