Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2681 ATGGCGGAACGGAACAATTCGAATTCAGAATCTGAGAGTACAGGGGTCAAAAGGGGGAATCAAAAGCACCCAATTTACAGAGGCGTACGGAAGAGAACTTGGGGAAAATGGGTGTCCGAGATCCGGCAGCCGAGGAAGAAATCTCGGATTTGGCTCGGGACTTTTCCGACGGCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGCGAATCGGCGAAAACGATTCTCAATTTCCCTCGACTCGCTGGGTTGCTTCCCCGGCCGGTGTCGCTAATGCCGAGGGATATTCAGGCGGCGGCTGCTAAGGCGGCGGCGATGGTTGAATTTAATTCTACGACGGCGTCGTTTTCGTTGTTGAATGATGAAGAAGGGTCTGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAGTCAGAGCTGAGTCGTGGAACGAGTTCGAGTTGGTTGAATCGGTGGATTGGTGGGAGAATCCGCCGTTTGCGGCGGCGGAAACGGATTTCTTTGGAGGATTCTCCGATCAGAGTACAATTCCGGTCGCCTTCGACGGCGGCGATAGGGAATGA 588 54.25 MAERNNSNSESESTGVKRGNQKHPIYRGVRKRTWGKWVSEIRQPRKKSRIWLGTFPTAEMAARAHDVAALSIKGESAKTILNFPRLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSTTASFSLLNDEEGSDELGEIVELPNIEEEVRAESWNEFELVESVDWWENPPFAAAETDFFGGFSDQSTIPVAFDGGDRE 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86246156 86246873 - Tan0016154.1 Tan04g2681 751085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2681 195 ProSiteProfiles AP2/ERF domain profile. 25 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 149 IPR051032 -
Tan04g2681 195 MobiDBLite consensus disorder prediction 1 15 - -
Tan04g2681 195 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677(InterPro)
Tan04g2681 195 FunFam Ethylene-responsive transcription factor 2 24 85 - -
Tan04g2681 195 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 SMART rav1_2 25 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 MobiDBLite consensus disorder prediction 1 25 - -
Tan04g2681 195 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2681 195 CDD AP2 24 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2681 Tan-Chr4:86246156 Tan08g0138 Tan-Chr8:1200833 1.40E-35 dispersed
Tan04g2681 Tan-Chr4:86246156 Tan06g0265 Tan-Chr6:2144087 2.60E-47 wgd
Tan04g2681 Tan-Chr4:86246156 Tan09g1224 Tan-Chr9:64693612 1.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27334 PF00847 AP2 1.70E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2681 K09286 - csv:101222354 302.753