Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2688 ATGTTTTCGTCAATGAATCCTGTACGAATTCGCACTTTGTTCTTCCTTCTATACTTTACCGTCCTTCTTCAAGATCATTCCCTTTGTTCTTCTTATCCCACGCCCTTAAATTGTACGGATACGACCCGTTTATGCACCTCGTTTCTGGCCTTCAAACCTCAGCCAAATCAGACGCTTTCTGTGATCCAGAGTATGTTCGACGCATTGCCTGAAGATGTTACCGTTGAAGGCAATGGCCGGGACTATGTGTTCATCAGGAAGAACTGCTCCTGTGCCTCTGGATTGAAGAAATACATCACCAATACCACTTTTACCATCAAATCGAATCGCGGTTTGGTGTATGACATTGTTATGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACGACCCGCATGGCGAGGAACGGCGCTGTTGTGTCTCTGCGGCTGTTTTGTGCCTGTTCAAGCGGGTTGTGGAATTATTTGATGAGCTATGTTATGAGAGATGGCGATACCATTGAGTCTTTGGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAGTCGGTGAATGGGATTGAAAATCCCAGCAATGTCACTGTGGGTGCTTTGTATTATATTCCCTTGAATTCGGTTCCTGGTGATCCTTATCCATCGGAGACTGACATTTCTCCTACTCCTACTCCTGCTCCTTCCTATTCTCTGAGCAATTTCTCAGATAATGCTGAGAATCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATCTTATTAGGCATAGCAGGTTATGCTTGCTGTAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTTCGCACAAGTTCCATATTCTTGGGAAGTCGAGTTTCTGTTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAGATTGGAAACAAGCCAGCGCAGAATCTAGCGATAACCAGAGTGCAATTCCAAAAGCTTTCGAGAGCAATGTATTCGATGTAGACAAACCTGTGGTTTTCTCATGCGAAGAAATTTTTTCCTCAACCGATGGCTTCTCTGATTCGAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACGGCAACGAAGACTAAAGAGTTTATGGCGGAGATGAAAGTCCTCTGCAAGGTTCATCATGCGAACCTGGTAGAACTGATCGGTTATGCGGCCAGTGAGGAGGAGCTCTTTCTTATTTATGAATTTGCTCAAAAAGGTCCACTCAAAAGTCATTTGCACGATCCTCTGAACAAGGGTCATACATCCCTATCTTGGATTATGAGACTCCAAATCTCTTTGGACGCCGCAAGAGGTCTCGAATACATTCACGAGCACACTAAAACTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGCTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACCAAAGTTGTTGGTACATACGGTTATCTTGCTCCTGAATATTTGAGTAACGGTCTTGCTACAACCAAAAGTGATGTGTATGCTTTCGGCGTCGTTCTTTTTGAGCTTATGTCTGGAAAAGAGGCAATTATACGGACCGAGGGCACAACTATGAAAAATCCTGAGAGACGTTCACTCGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCCGATCCTATGAATATGGCAAGTTTGAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATCCAATCTTACGACCCGACATGAAACAAGTCGTAATATCCTTGTCACAGATTCTACTCTCTTCGGTCGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTTTCAGTGGTCTTGTCCAAGGAAGATAG 2013 44.06 MFSSMNPVRIRTLFFLLYFTVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDALPEDVTVEGNGRDYVFIRKNCSCASGLKKYITNTTFTIKSNRGLVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPSNVTVGALYYIPLNSVPGDPYPSETDISPTPTPAPSYSLSNFSDNAENPKRHPPYIWIVGSLGIILVLILLGIAGYACCRWLKCFSRSRSSHSKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQASAESSDNQSAIPKAFESNVFDVDKPVVFSCEEIFSSTDGFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEFAQKGPLKSHLHDPLNKGHTSLSWIMRLQISLDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAFGVVLFELMSGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86351858 86356143 - Tan0019879.1 Tan04g2688 751092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2688 670 Gene3D Phosphorylase Kinase; domain 1 339 431 - -
Tan04g2688 670 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2688 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Tan04g2688 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2688 670 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2688 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Tan04g2688 670 SMART LysM_2 158 202 IPR018392 -
Tan04g2688 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2688 670 Gene3D LysM domain 154 208 IPR036779 -
Tan04g2688 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Tan04g2688 670 Pfam LysM domain 161 196 IPR018392 -
Tan04g2688 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Tan04g2688 670 Gene3D Transferase(Phosphotransferase) domain 1 433 657 - -
Tan04g2688 670 FunFam Kinase family protein 335 431 - -
Tan04g2688 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Tan04g2688 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 23 659 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0372 Tan-Chr2:3162581 Tan04g2688 Tan-Chr4:86351858 5.60E-75 dispersed
Tan04g2688 Tan-Chr4:86351858 Tan10g0760 Tan-Chr10:6280105 2.20E-56 dispersed
Tan05g0229 Tan-Chr5:1755437 Tan04g2688 Tan-Chr4:86351858 9.00E-37 dispersed
Tan04g2688 Tan-Chr4:86351858 Tan04g1280 Tan-Chr4:12354703 5.10E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67500 PF07714 PK_Tyr_Ser-Thr 6.80E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2688 - - - 0.0