Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2726 ATGGATGATTTGCTTTGGAATGGCTCATGGAGCAATAATGGCGAAGACGACGATTGCGAAGAAAGCTTATTCGTCTCCGACGATCCGAGTCATTGTTCGAGCCCGCCATTACAAGAGCTTCAAACAGTTGCAAGAATATTGGGGTTATCGGAGATCGAAACTCCGGCGCCGGAGAGGAGGGCAGAGGAGTTGGCTAGGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGAGTTTTGTTTGAAGAGCTTGAAAATGACAAAGGAATTGCACCACAGGGTGGATCTTGGGACATTTTTGAGAACCAAAAACAAAAGCAACAAAATCCCATTACAGAAAAACAACCAAGCTCAGCCAACAAAAATGTTCATTCTCAACACCCTACAACTTCATCTGCATCTCCATCATCTTCGAACAACGACGAGACCGAGCCTACCGATCGAGATCAAATCGTGTCACGAATGAAGGAATTGATATATCATGCAGCGGTGTTTAGGCCGGTGAACTTCGAGTTGGAGATGGTGGAGAAGAAGAGGAGGAGGAACGTCAAGATGTCGAAGGATCCACAGACGGTGGCGGCGAGAAAACGGAGGGAGAAGATAAGCGAAAAAATTAGGGTTTTGCAGAGCTTGGTTCCTGGTGGAAGCAAAATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCATAAACTACAAACTTGGCTCGATTGATTGTCTCTCAACAAGCACCTCTTTCAACTCCACTACTTTTCCTTCAAGTGCTTATTTTTCTTTCTAA 825 46.67 MDDLLWNGSWSNNGEDDDCEESLFVSDDPSHCSSPPLQELQTVARILGLSEIETPAPERRAEELARDPKSWPAGASSGGVLFEELENDKGIAPQGGSWDIFENQKQKQQNPITEKQPSSANKNVHSQHPTTSSASPSSSNNDETEPTDRDQIVSRMKELIYHAAVFRPVNFELEMVEKKRRRNVKMSKDPQTVAARKRREKISEKIRVLQSLVPGGSKMDTASMLDEAASYLKFLRAQIKALEGINYKLGSIDCLSTSTSFNSTTFPSSAYFSF 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86745543 86747334 - Tan0015518.1 Tan04g2726 751130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2726 274 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 106 261 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g2726 274 CDD bHLH_AtIND_like 187 243 - -
Tan04g2726 274 SMART finulus 192 241 IPR011598 GO:0046983(InterPro)
Tan04g2726 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983(InterPro)
Tan04g2726 274 Pfam Helix-loop-helix DNA-binding domain 195 236 IPR011598 GO:0046983(InterPro)
Tan04g2726 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 249 IPR036638 GO:0046983(InterPro)
Tan04g2726 274 MobiDBLite consensus disorder prediction 1 35 - -
Tan04g2726 274 Gene3D - 185 246 IPR036638 GO:0046983(InterPro)
Tan04g2726 274 MobiDBLite consensus disorder prediction 99 142 - -
Tan04g2726 274 MobiDBLite consensus disorder prediction 51 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0299 Tan-Chr2:2543325 Tan04g2726 Tan-Chr4:86745543 7.90E-09 dispersed
Tan04g2726 Tan-Chr4:86745543 Tan05g1685 Tan-Chr5:49618688 8.90E-25 dispersed
Tan04g2746 Tan-Chr4:86877721 Tan04g2726 Tan-Chr4:86745543 1.90E-09 transposed
Tan05g2748 Tan-Chr5:79504350 Tan04g2726 Tan-Chr4:86745543 6.70E-10 transposed
Tan04g2726 Tan-Chr4:86745543 Tan06g0202 Tan-Chr6:1768502 3.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27338 PF00010 HLH 5.40E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2726 - - - 0.0