Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2726 | ATGGATGATTTGCTTTGGAATGGCTCATGGAGCAATAATGGCGAAGACGACGATTGCGAAGAAAGCTTATTCGTCTCCGACGATCCGAGTCATTGTTCGAGCCCGCCATTACAAGAGCTTCAAACAGTTGCAAGAATATTGGGGTTATCGGAGATCGAAACTCCGGCGCCGGAGAGGAGGGCAGAGGAGTTGGCTAGGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGAGTTTTGTTTGAAGAGCTTGAAAATGACAAAGGAATTGCACCACAGGGTGGATCTTGGGACATTTTTGAGAACCAAAAACAAAAGCAACAAAATCCCATTACAGAAAAACAACCAAGCTCAGCCAACAAAAATGTTCATTCTCAACACCCTACAACTTCATCTGCATCTCCATCATCTTCGAACAACGACGAGACCGAGCCTACCGATCGAGATCAAATCGTGTCACGAATGAAGGAATTGATATATCATGCAGCGGTGTTTAGGCCGGTGAACTTCGAGTTGGAGATGGTGGAGAAGAAGAGGAGGAGGAACGTCAAGATGTCGAAGGATCCACAGACGGTGGCGGCGAGAAAACGGAGGGAGAAGATAAGCGAAAAAATTAGGGTTTTGCAGAGCTTGGTTCCTGGTGGAAGCAAAATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCATAAACTACAAACTTGGCTCGATTGATTGTCTCTCAACAAGCACCTCTTTCAACTCCACTACTTTTCCTTCAAGTGCTTATTTTTCTTTCTAA | 825 | 46.67 | MDDLLWNGSWSNNGEDDDCEESLFVSDDPSHCSSPPLQELQTVARILGLSEIETPAPERRAEELARDPKSWPAGASSGGVLFEELENDKGIAPQGGSWDIFENQKQKQQNPITEKQPSSANKNVHSQHPTTSSASPSSSNNDETEPTDRDQIVSRMKELIYHAAVFRPVNFELEMVEKKRRRNVKMSKDPQTVAARKRREKISEKIRVLQSLVPGGSKMDTASMLDEAASYLKFLRAQIKALEGINYKLGSIDCLSTSTSFNSTTFPSSAYFSF | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 86745543 | 86747334 | - | Tan0015518.1 | Tan04g2726 | 751130 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2726 | 274 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 106 | 261 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g2726 | 274 | CDD | bHLH_AtIND_like | 187 | 243 | - | - | |
Tan04g2726 | 274 | SMART | finulus | 192 | 241 | IPR011598 | GO:0046983(InterPro) | |
Tan04g2726 | 274 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 186 | 235 | IPR011598 | GO:0046983(InterPro) | |
Tan04g2726 | 274 | Pfam | Helix-loop-helix DNA-binding domain | 195 | 236 | IPR011598 | GO:0046983(InterPro) | |
Tan04g2726 | 274 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 190 | 249 | IPR036638 | GO:0046983(InterPro) | |
Tan04g2726 | 274 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Tan04g2726 | 274 | Gene3D | - | 185 | 246 | IPR036638 | GO:0046983(InterPro) | |
Tan04g2726 | 274 | MobiDBLite | consensus disorder prediction | 99 | 142 | - | - | |
Tan04g2726 | 274 | MobiDBLite | consensus disorder prediction | 51 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0299 | Tan-Chr2:2543325 | Tan04g2726 | Tan-Chr4:86745543 | 7.90E-09 | dispersed | |
Tan04g2726 | Tan-Chr4:86745543 | Tan05g1685 | Tan-Chr5:49618688 | 8.90E-25 | dispersed | |
Tan04g2746 | Tan-Chr4:86877721 | Tan04g2726 | Tan-Chr4:86745543 | 1.90E-09 | transposed | |
Tan05g2748 | Tan-Chr5:79504350 | Tan04g2726 | Tan-Chr4:86745543 | 6.70E-10 | transposed | |
Tan04g2726 | Tan-Chr4:86745543 | Tan06g0202 | Tan-Chr6:1768502 | 3.50E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27338 | PF00010 | HLH | 5.40E-06 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2726 | - | - | - | 0.0 |