Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2742 ATGGAAAGCCCCGCCATCTTCTCAATTTTCGTCTTCCTCCTCTCACTCTGTTTTAGGCTTCGAGCTTTCTCAGCCATGGCGGCTGACGAGGCAGGTACAGTGAAGGTCGGGGTCGTTCTCGACTCCGATTCGTCGATTGGGAAAATGGGGTTGAGTTGTATGGAAATGGCTCTCTCGGATTTCTATGGATTTCATAGAAATTACAAGACCCGGTTGGCTCTGTTCGCGAAAAACTCCATGGGAGACGTTGTTGAAGCTACTGCTGCAGCTTTGGAGTTAATCAAGAAGGAAGAAGTGGAAGCCATTGTTGGGCCACAGAATTCAACTCAAGCAGCTTTCATGGCGGATCTTGGGAAAAAATCTCAGGTACCCATAATTTCATTCTCCGCTACAACTACAACTCAATCGCTGAGTTCTCATCGGAACCCTTACTTTTTCCGAGCGACCCAAATCGATTCATCGCAAGTCAAACCCATTGCCGCTATTTTTGAAGTCTTCGATTGGCGACTGGCGGTGCTCATTCACTCTGACGATGAATATGGCGAGGGGATTTTGCCGTCCATGAGAGATGCTCTTCGAGAAATTAACACTCGAGTCGCTTACGAGACTGCGATTCCTCAATCTGCCTCCGATGACAGAATCGCCAAAGAGCTTTACAAATTGATGACGATGCAAACGAGGGTTTTCGTTGTTCATATGTTGCCCGAGCTTGGTTCTCGCGTTTTCTCCATGGCTAAGGAGATTGGAATGATGGGGTCGGGTTATATTTGGATTATAACGGATGGGATGAGTAATTTTCTCTCTCGGATTGATGGTTCCGCCATGGAAGCCATGAGTGGAGCTTTGGCTGTAAGGACTTACATTCCCAGAACAGAAGAACTTGAAGATTTTCAGCTACGATGGAGGAAGAAATTTGGAAAGGAAATTTCTGAACTGAATATATTTGGTTTGCGAGCTTATGATGCTACTGTTGCTCTAGCCAAGGCTGTGGAGAGAGTTGGAACCACAGAGTTCATTGTCAAGAATCCAAATGTTTCTGGTAAATCCACAGATCTTGACAATCTTGGTGTCTCTCGAAACGGTCCAAGGTTGTCTGAGGCATTGTCTAAAACACATTTCAAAGGGCTTGCAGGAGACTTCAGACTGGTTGAAGGGCAATTGAAATCATCAACTTATGAGATTATAAACATCAATCATGAAAAGAATATTACAGTGGTTGGATTCTGGACACCAGAAAATGGACTGACACAAACCTTAGACTCCACAAAAATGAGCTCAAACACTTCTGTTGCTAATCTTAGCCATATCATATGGCCAGGGGATGATCCCAATTCTTTTGGTTTCCCAAAAGGTTGGGAGATTCCAACAAATGAAAAGAAGCTAAGAATTGGAATTCCAGTTAAATCTGGGGTCAGCAAGTTTGTTAGAGAGATAAGGGATCCTGCGACTAACAGGATAAAGACAACAGGGTACAGTATCGATATCTTCGAAGCTGTAATCGAAGCACTACCGTACGCTGTTTCGTATGAATACATTCGATTTGCAAACGATAAAGGAGAAATGGCTGGTAGTTATGAGGACATGGTCAAGCAAGTGTACTATGGGGTATATGATGCAGTTGTGGGAGACGTATCCATCAGAGAAAGCAGATCCCTACATGTAGACTTCACATTGCCATACTCTGAAGCTAGTGTGTCGATGGTTGTACTATTTCGAGATAACAACAAAAAAGCTTGGCTTTTCTTGAAGCCTTTAACATTGGACCTTTGGTTCACAACTGGTTTCTTTTTTGCCTTCATTGGACTGGTCATCTGGATTCTCGAGCACAGAATCAATGAAGATTTTAGAGGTCCTCCCTCGCACGAAATCGGGACAAGCTTCTGGTTTTCTTTCTCAACTATGGTGTATGCTCAAAGGGAGAAGGTGGAAAGCAACTTGGCTAGATTTGTGGTAATAGTATGGCTGTTTGTGGTGCTCATATTGACTCAAAGTTACACGGCCAGTCTCACATCACTACTAACGGTTCAGAAACTCGACCCAACTTTTACTGATATGAACCAACTGAAGGAGCAGAGGGTGAATGTTGGTTACCCAAATGGTTCTTTTGTTCACGAACTGCTGATAGCTCAAGGTTTTCATCCATCCAAGCTTGTAATTTATAACAATATGGCACATTGTGGGTCATTGTTCTTAAATGGGACCATAGCTGCTGCCTTTGATGAAATCCCTTATCTCAAGGTTCTTACAACAACATATTGCACCAACTGCACCATCGTCGGTCCCACGATGAAATCGAACGGCTTCGGCTATGTAAGTGCGAAAATTTTCCTTTGTCTTTCATGTTGGTTTCAAGAGAGAGATACAATTCATTAG 2373 43.45 MESPAIFSIFVFLLSLCFRLRAFSAMAADEAGTVKVGVVLDSDSSIGKMGLSCMEMALSDFYGFHRNYKTRLALFAKNSMGDVVEATAAALELIKKEEVEAIVGPQNSTQAAFMADLGKKSQVPIISFSATTTTQSLSSHRNPYFFRATQIDSSQVKPIAAIFEVFDWRLAVLIHSDDEYGEGILPSMRDALREINTRVAYETAIPQSASDDRIAKELYKLMTMQTRVFVVHMLPELGSRVFSMAKEIGMMGSGYIWIITDGMSNFLSRIDGSAMEAMSGALAVRTYIPRTEELEDFQLRWRKKFGKEISELNIFGLRAYDATVALAKAVERVGTTEFIVKNPNVSGKSTDLDNLGVSRNGPRLSEALSKTHFKGLAGDFRLVEGQLKSSTYEIININHEKNITVVGFWTPENGLTQTLDSTKMSSNTSVANLSHIIWPGDDPNSFGFPKGWEIPTNEKKLRIGIPVKSGVSKFVREIRDPATNRIKTTGYSIDIFEAVIEALPYAVSYEYIRFANDKGEMAGSYEDMVKQVYYGVYDAVVGDVSIRESRSLHVDFTLPYSEASVSMVVLFRDNNKKAWLFLKPLTLDLWFTTGFFFAFIGLVIWILEHRINEDFRGPPSHEIGTSFWFSFSTMVYAQREKVESNLARFVVIVWLFVVLILTQSYTASLTSLLTVQKLDPTFTDMNQLKEQRVNVGYPNGSFVHELLIAQGFHPSKLVIYNNMAHCGSLFLNGTIAAAFDEIPYLKVLTTTYCTNCTIVGPTMKSNGFGYVSAKIFLCLSCWFQERDTIH 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 86837837 86842329 + Tan0015568.2 Tan04g2742 751146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2742 790 PANTHER OS06G0188250 PROTEIN 22 488 IPR015683 -
Tan04g2742 790 Gene3D - 471 578 - -
Tan04g2742 790 Gene3D - 27 157 - -
Tan04g2742 790 Gene3D - 158 317 - -
Tan04g2742 790 CDD PBP1_GABAb_receptor_plant 35 419 IPR044440 -
Tan04g2742 790 FunFam Glutamate receptor 460 579 - -
Tan04g2742 790 Pfam Ligand-gated ion channel 587 723 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan04g2742 790 Gene3D - 579 707 - -
Tan04g2742 790 Pfam Receptor family ligand binding region 52 399 IPR001828 -
Tan04g2742 790 PIRSF IGluLR_plant 4 774 IPR017103 -
Tan04g2742 790 SUPERFAMILY Periplasmic binding protein-like I 27 440 IPR028082 -
Tan04g2742 790 FunFam Glutamate receptor 578 708 - -
Tan04g2742 790 SMART GluR_14 460 785 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan04g2742 790 SUPERFAMILY Periplasmic binding protein-like II 446 772 - -
Tan04g2742 790 Gene3D - 319 464 - -
Tan04g2742 790 FunFam Glutamate receptor 155 313 - -
Tan04g2742 790 CDD GluR_Plant 459 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2742 Tan-Chr4:86837837 Tan09g1644 Tan-Chr9:68080492 8.20E-164 dispersed
Tan04g2741 Tan-Chr4:86837837 Tan04g2742 Tan-Chr4:86837837 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2742 K05387 - csv:101213301 1285.78