Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2760 ATGATAAAAAGTTTGTTGGTTCAACAACAAGCTCACGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCTTGCTCCGGCAACCGTTCCGATCAGATTCCGGCGAACTATTCCGGCGGCTTGTATTTTTCTCCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCAGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCAACAAATAGATTCATATGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAACTTGCCATGGAAATTGAAGCAAAGAGCAAACAAAGAGGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCACCATGATCCATCAAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGCAGGAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCTTTAGCAGAAGAAAGTGCAAGAACCATTACATCAAACAACCCAATACTTATAAGTACAAATAATAATAATAATCAAAGCCCTCCACTAATTTCCACTCCTATAATTTCTTCAATCTCTCATTTAAACTTCCAAACACAAACCCATTTCAATCCTTTAGATATCAACTCATTTTCCCTCAAAAAAGAGCCTCACCAAAATGAACAAAACTCCACCAATTTCATTCCCCCATGGCTTAATGGTTGTTCTCCCTCAAGATCATCATCATTATTAGATCATAATAATCATAATCAAGACCTTAATAATCCTCATCAAAATCTCATCATTAATAACCCTAATTATCATCTTCATCATCTTCCAAGTGCTGCTTCTTCTTCTTCTTCCCCTTCTCCACACATGTCAGCCACAGCACTTCTCCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAGCAGCAGCAACAACAACAACAATAATGCTGAGCCACCACACACAATAATAATCAACAACAGGCCCCAACACTCTCAGGATCATCACGTGACTGATTCTTCTGCCAGCACTAATAATAATAATATTACAAGTTGTAATTTTGGCCTTAACTTGTCCTCCTCACGTGACAATCAGATCAATCATCAGATTATTGGTGCAGGCCTTTCTCATGGACTGCCACTCTACAGGAACAAATCACTTCTTCAAAGCACTTTCATCAACAACAACAACAACAATACTACTACTTTTTCTCCAAGTGCTTTTGATGGGGCTTCTTTTGAATTAGATGAATTTGGAGGGATCTTGAAGAAAGATGAGATGTTTAATGATAATCATCCAATAATGTCAAGAACAAGTGCTAGTGAAGGATTGAGTACAAGAGATTTCTTGGGGCTTAGAGCAATTTCTTACAGTGAATTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATGAATGGAGCTGGTCAAAGTCCTCAAAGTCAAATTCAAAAGCAACCCAGCTGGCAAGGTTAG 1641 40.28 MIKSLLVQQQAHAMEENLSNLTSASGEASACSGNRSDQIPANYSGGLYFSPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITSNNPILISTNNNNNQSPPLISTPIISSISHLNFQTQTHFNPLDINSFSLKKEPHQNEQNSTNFIPPWLNGCSPSRSSSLLDHNNHNQDLNNPHQNLIINNPNYHLHHLPSAASSSSSPSPHMSATALLQKAAQMGATMSSSSNNNNNNAEPPHTIIINNRPQHSQDHHVTDSSASTNNNNITSCNFGLNLSSSRDNQINHQIIGAGLSHGLPLYRNKSLLQSTFINNNNNNTTTFSPSAFDGASFELDEFGGILKKDEMFNDNHPIMSRTSASEGLSTRDFLGLRAISYSEFLSNIAAAGYGNCMNGAGQSPQSQIQKQPSWQG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87095696 87099927 - Tan0011819.2 Tan04g2760 751164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2760 546 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Tan04g2760 546 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 188 225 - -
Tan04g2760 546 Gene3D Classic Zinc Finger 65 136 - -
Tan04g2760 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Tan04g2760 546 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Tan04g2760 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 510 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan04g2760 546 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Tan04g2760 546 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Tan04g2760 546 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 161 185 - -
Tan04g2760 546 MobiDBLite consensus disorder prediction 297 322 - -
Tan04g2760 546 MobiDBLite consensus disorder prediction 42 69 - -
Tan04g2760 546 MobiDBLite consensus disorder prediction 354 400 - -
Tan04g2760 546 FunFam protein indeterminate-domain 12-like 64 133 - -
Tan04g2760 546 Gene3D Classic Zinc Finger 139 220 - -
Tan04g2760 546 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 123 157 - -
Tan04g2760 546 SMART c2h2final6 162 182 IPR013087 -
Tan04g2760 546 SMART c2h2final6 127 157 IPR013087 -
Tan04g2760 546 SMART c2h2final6 85 107 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2760 Tan-Chr4:87095696 Tan06g0162 Tan-Chr6:1498890 1.20E-100 dispersed
Tan04g2759 Tan-Chr4:87095696 Tan04g2760 Tan-Chr4:87095696 1.20E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27342 PF12171 zf-C2H2_jaz 8.10E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2760 K25870 - csv:101204728 603.594