Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2760 | ATGATAAAAAGTTTGTTGGTTCAACAACAAGCTCACGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCTTGCTCCGGCAACCGTTCCGATCAGATTCCGGCGAACTATTCCGGCGGCTTGTATTTTTCTCCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCAGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCAACAAATAGATTCATATGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAACTTGCCATGGAAATTGAAGCAAAGAGCAAACAAAGAGGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCACCATGATCCATCAAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGCAGGAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCTTTAGCAGAAGAAAGTGCAAGAACCATTACATCAAACAACCCAATACTTATAAGTACAAATAATAATAATAATCAAAGCCCTCCACTAATTTCCACTCCTATAATTTCTTCAATCTCTCATTTAAACTTCCAAACACAAACCCATTTCAATCCTTTAGATATCAACTCATTTTCCCTCAAAAAAGAGCCTCACCAAAATGAACAAAACTCCACCAATTTCATTCCCCCATGGCTTAATGGTTGTTCTCCCTCAAGATCATCATCATTATTAGATCATAATAATCATAATCAAGACCTTAATAATCCTCATCAAAATCTCATCATTAATAACCCTAATTATCATCTTCATCATCTTCCAAGTGCTGCTTCTTCTTCTTCTTCCCCTTCTCCACACATGTCAGCCACAGCACTTCTCCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAGCAGCAGCAACAACAACAACAATAATGCTGAGCCACCACACACAATAATAATCAACAACAGGCCCCAACACTCTCAGGATCATCACGTGACTGATTCTTCTGCCAGCACTAATAATAATAATATTACAAGTTGTAATTTTGGCCTTAACTTGTCCTCCTCACGTGACAATCAGATCAATCATCAGATTATTGGTGCAGGCCTTTCTCATGGACTGCCACTCTACAGGAACAAATCACTTCTTCAAAGCACTTTCATCAACAACAACAACAACAATACTACTACTTTTTCTCCAAGTGCTTTTGATGGGGCTTCTTTTGAATTAGATGAATTTGGAGGGATCTTGAAGAAAGATGAGATGTTTAATGATAATCATCCAATAATGTCAAGAACAAGTGCTAGTGAAGGATTGAGTACAAGAGATTTCTTGGGGCTTAGAGCAATTTCTTACAGTGAATTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATGAATGGAGCTGGTCAAAGTCCTCAAAGTCAAATTCAAAAGCAACCCAGCTGGCAAGGTTAG | 1641 | 40.28 | MIKSLLVQQQAHAMEENLSNLTSASGEASACSGNRSDQIPANYSGGLYFSPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITSNNPILISTNNNNNQSPPLISTPIISSISHLNFQTQTHFNPLDINSFSLKKEPHQNEQNSTNFIPPWLNGCSPSRSSSLLDHNNHNQDLNNPHQNLIINNPNYHLHHLPSAASSSSSPSPHMSATALLQKAAQMGATMSSSSNNNNNNAEPPHTIIINNRPQHSQDHHVTDSSASTNNNNITSCNFGLNLSSSRDNQINHQIIGAGLSHGLPLYRNKSLLQSTFINNNNNNTTTFSPSAFDGASFELDEFGGILKKDEMFNDNHPIMSRTSASEGLSTRDFLGLRAISYSEFLSNIAAAGYGNCMNGAGQSPQSQIQKQPSWQG | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 87095696 | 87099927 | - | Tan0011819.2 | Tan04g2760 | 751164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2760 | 546 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
Tan04g2760 | 546 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 188 | 225 | - | - | |
Tan04g2760 | 546 | Gene3D | Classic Zinc Finger | 65 | 136 | - | - | |
Tan04g2760 | 546 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 107 | IPR013087 | - | |
Tan04g2760 | 546 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 182 | IPR036236 | - | |
Tan04g2760 | 546 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 39 | 510 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan04g2760 | 546 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 140 | 219 | - | - | |
Tan04g2760 | 546 | Pfam | Zinc finger, C2H2 type | 85 | 107 | IPR013087 | - | |
Tan04g2760 | 546 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 161 | 185 | - | - | |
Tan04g2760 | 546 | MobiDBLite | consensus disorder prediction | 297 | 322 | - | - | |
Tan04g2760 | 546 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
Tan04g2760 | 546 | MobiDBLite | consensus disorder prediction | 354 | 400 | - | - | |
Tan04g2760 | 546 | FunFam | protein indeterminate-domain 12-like | 64 | 133 | - | - | |
Tan04g2760 | 546 | Gene3D | Classic Zinc Finger | 139 | 220 | - | - | |
Tan04g2760 | 546 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 123 | 157 | - | - | |
Tan04g2760 | 546 | SMART | c2h2final6 | 162 | 182 | IPR013087 | - | |
Tan04g2760 | 546 | SMART | c2h2final6 | 127 | 157 | IPR013087 | - | |
Tan04g2760 | 546 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2760 | Tan-Chr4:87095696 | Tan06g0162 | Tan-Chr6:1498890 | 1.20E-100 | dispersed | |
Tan04g2759 | Tan-Chr4:87095696 | Tan04g2760 | Tan-Chr4:87095696 | 1.20E-259 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27342 | PF12171 | zf-C2H2_jaz | 8.10E-05 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2760 | K25870 | - | csv:101204728 | 603.594 |